CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1615850_s_at

Gene name hypothetical protein LOC100258165
Homology with Arabidopsis Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=6e+0)

Module size 6 genes

NF 0.36

%ile 52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1615850_s_at BQ796206 hypothetical protein LOC100258165 - 6e+0 At5g05110 cysteine protease inhibitor, putative / cystatin, putative O.I. H.G. S.X.
0.50 72.7 0.98 1610020_at BQ799829 hypothetical protein LOC100260445 - 2e-114 At2g27450 NLP1 (NITRILASE-LIKE PROTEIN 1) O.I. H.G. S.X.
0.40 57.7 0.97 1618957_at CF603287 hypothetical protein LOC100263857 - 6e-27 At3g46200 aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9) O.I. H.G. S.X.
0.40 57.7 0.98 1621917_at CF208474 hypothetical protein LOC100244091 - 1e-20 At3g03420 Ku70-binding family protein O.I. H.G. S.X.
0.29 37.7 0.97 1619232_at CA817187 hypothetical protein LOC100248696 - 6e-6 At3g06420 ATG8H (autophagy 8h) O.I. H.G. S.X.
0.14 14.4 0.97 1610077_at CB919847 hypothetical protein LOC100264401 - 4e-38 At1g77710 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 94.9 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
2.8 93.4 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
2.6 92.5 GSM147677 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 6
2.4 91.3 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
2.2 89.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.1 89.1 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.1 89.1 GSM147694 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 23
2.0 88.2 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
2.0 88.2 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19

Inter-species module comparison

A co-expression module including the rice gene, Os01g0270100, orthologous to the query gene, 1615850_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 Os01g0270100 At5g05110 - Cysteine proteinase inhibitor 2e-3 At3g12490 cysteine protease inhibitor, putative / cystatin, putative O.I. H.G. S.X.
0.36 44.0 Os03g0861800 At5g05110 - Cyclin-like F-box domain containing protein 1e-2 At5g66540 - O.I. H.G. S.X.
0.35 41.7 Os04g0508300 At5g05110 - Glutaredoxin 5e-31 Atcg00680 - O.I. H.G. S.X.
0.31 34.5 Os02g0556600 At5g05110 - Sulfated surface glycoprotein 185 precursor (SSG185) 7e-5 At1g35470 SPla/RYanodine receptor (SPRY) domain-containing protein O.I. H.G. S.X.
0.14 9.3 Os08g0191600 At5g05110 - Autophagy 8e 9e-33 At1g62040 ATG8C (autophagy 8c) O.I. H.G. S.X.
0.13 8.2 Os12g0632000 At5g05110 - Glycine-rich RNA-binding protein GRP1A 8e-1 At5g40970 unknown protein O.I. H.G. S.X.
0.09 4.9 Os06g0714500 At5g05110 - - 7e-17 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative O.I. H.G. S.X.
0.08 4.2 Os06g0152200 At5g05110 - Salt-tolerance protein 7e-1 At5g45390 CLPP4 (CLP PROTEASE P4) O.I. H.G. S.X.
0.06 3.0 Os03g0137400 At5g05110 - Conserved hypothetical protein 4e-10 At4g35870 - O.I. H.G. S.X.
0.05 2.5 Os09g0512900 At5g05110 - Conserved hypothetical protein 7e-19 At5g11680 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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