Co-expression analysis

Gene ID	1615809_at
Gene name	hypothetical protein LOC100267763
Homology with Arabidopsis	Similar to At1g32170: XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) (HF=4e-11)
Module size	7 genes
NF	0.02
%ile	3.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	91.3	0.91	1615809_at	CB980277	hypothetical protein LOC100267763	-	4e-11	At1g32170	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1610295_at	BQ797947	hypothetical protein LOC100259329	-	8e-5	At2g25090	CIPK16 (CBL-INTERACTING PROTEIN KINASE 16)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.90	1621903_at	CF404558	UPF0497 membrane protein 15	-	2e+0	At4g09170	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.95	1618353_at	BQ797889	hypothetical protein LOC100243778	-	2e-6	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.93	1608941_at	CF371822	-	-	1e+0	At1g61920	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.93	1622323_at	CB969061	hypothetical protein LOC100265497	-	3e-4	At3g25160	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.90	1621127_s_at	CB003443	hypothetical protein LOC100257097	-	5e-1	At3g03270	universal stress protein (USP) family protein / early nodulin ENOD18 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	99.8	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.4	99.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.1	89.1	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage