Co-expression analysis

Gene ID	1615789_at
Gene name
Homology with Arabidopsis	Similar to At1g26250: proline-rich extensin, putative (HF=1e-3)
Module size	6 genes
NF	0.77
%ile	97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.88	1615789_at	BQ795769	-	-	1e-3	At1g26250	proline-rich extensin, putative	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.85	1617430_s_at	Z54234.1	chitinase class I	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.87	1607833_at	CD713864	-	-	1e+0	At1g49800	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.92	1620438_at	CD713864	hypothetical protein LOC100243043	-	1e+0	At1g49800	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.85	1611361_at	CB008551	hypothetical protein LOC100241171	-	5e-1	At4g24540	AGL24 (AGAMOUS-LIKE 24)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.90	1610538_at	BQ796215	hypothetical protein LOC100260291	-	3e-1	At1g60740	peroxiredoxin type 2, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.1	89.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
1.8	86.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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