CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1615742_at

Gene name 5-enolpyruvylshikimate-3-phosphate synthase
Homology with Arabidopsis Similar to At2g45300: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (HF=8e-121)

Module size 6 genes

NF 0.21

%ile 29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 75.2 0.95 1615742_at CB970670 5-enolpyruvylshikimate-3-phosphate synthase - 8e-121 At2g45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase O.I. H.G. S.X.
0.67 87.9 0.96 1620412_at CF511306 hypothetical protein LOC100247288 - 6e-10 At1g36160 ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) O.I. H.G. S.X.
0.55 77.3 0.96 1614440_at BQ796922 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase - 2e-53 At4g39980 DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1) O.I. H.G. S.X.
0.33 45.7 0.96 1610068_at CD711769 hypothetical protein LOC100252154 - 2e-19 At2g36670 aspartyl protease family protein O.I. H.G. S.X.
0.15 15.6 0.96 1618421_at CF604028 hypothetical protein LOC100252493 - 6e-6 At3g57560 aspartate/glutamate/uridylate kinase family protein O.I. H.G. S.X.
0.04 5.2 0.96 1611681_at CF513131 hypothetical protein LOC100241604 - 4e+0 At5g39360 EDL2 (EID1-like 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	75.2	0.95	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.
0.67	87.9	0.96	1620412_at	CF511306	hypothetical protein LOC100247288	-	6e-10	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.
0.55	77.3	0.96	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.33	45.7	0.96	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.
0.15	15.6	0.96	1618421_at	CF604028	hypothetical protein LOC100252493	-	6e-6	At3g57560	aspartate/glutamate/uridylate kinase family protein	O.I.	H.G.	S.X.
0.04	5.2	0.96	1611681_at	CF513131	hypothetical protein LOC100241604	-	4e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.93	1621405_at	CF517917	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	3e-4	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.
0.59	80.6	0.93	1622282_at	CD712313	hypothetical protein LOC100245852	-	2e-10	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.53	75.2	0.91	1609514_at	BM437317	-	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	O.I.	H.G.	S.X.
0.50	72.7	0.92	1610821_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.
0.44	64.1	0.93	1610530_at	CB971103	hypothetical protein LOC100243696	-	7e-34	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.
0.44	64.1	0.96	1608328_s_at	CF609703	hypothetical protein LOC100257331	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	O.I.	H.G.	S.X.
0.40	57.7	0.92	1621307_at	CB969961	hypothetical protein LOC100267022	-	2e-21	At3g44720	ADT4 (arogenate dehydratase 4)	O.I.	H.G.	S.X.
0.40	57.7	0.94	1616191_s_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.
0.40	57.7	0.95	1616944_at	CF211395	hypothetical protein LOC100261951	-	1e-1	At5g65400	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.91	1611211_at	CF603196	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-10	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.
0.36	50.7	0.95	1617328_at	CF214435	hypothetical protein LOC100247950	-	8e-43	At4g36750	quinone reductase family protein	O.I.	H.G.	S.X.
0.35	48.5	0.92	1614506_at	CD801364	hypothetical protein LOC100241962	-	1e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.
0.35	48.5	0.92	1618396_at	CF373590	hypothetical protein LOC100261671	-	1e-7	At3g27030	unknown protein	O.I.	H.G.	S.X.
0.35	48.5	0.94	1610233_at	CF201218.1	hypothetical protein LOC100260900	-	1e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.
0.33	45.7	0.94	1619357_at	CB972316	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-71	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.
0.33	45.7	0.95	1607286_at	CF207311	hypothetical protein LOC100267511	-	3e-69	At3g12150	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.95	1613552_at	CB916656	hypothetical LOC100243703	-	1e-3	At5g58700	phosphoinositide-specific phospholipase C family protein	O.I.	H.G.	S.X.
0.31	41.3	0.93	1618478_at	CF515277	hypothetical protein LOC100259390	-	4e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.
0.31	41.3	0.95	1619161_at	CD802334	hypothetical protein LOC100262369	-	4e-3	At3g15300	VQ motif-containing protein	O.I.	H.G.	S.X.
0.31	41.3	0.95	1618362_s_at	CF200684.1	hypothetical protein LOC100255189	-	2e-74	At1g10670	ACLA-1	O.I.	H.G.	S.X.
0.26	32.0	0.92	1619065_at	CB972322	hypothetical protein LOC100253987	-	1e-2	At4g30470	cinnamoyl-CoA reductase-related	O.I.	H.G.	S.X.
0.25	30.5	0.92	1620231_s_at	CB981280	hypothetical protein LOC100264312	-	2e-39	At4g35840	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.6 97.6 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
2.9 93.8 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
2.9 93.8 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
2.7 93.0 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
2.6 92.5 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.6	97.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.9	93.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
2.9	93.8	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.7	93.0	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.6	92.5	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1615742_at
Gene name	5-enolpyruvylshikimate-3-phosphate synthase
Homology with Arabidopsis	Similar to At2g45300: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (HF=8e-121)
Module size	6 genes
NF	0.21
%ile	29.7

Co-expression analysis

Gene ID 1615742_at Gene name 5-enolpyruvylshikimate-3-phosphate synthase Homology with ArabidopsisSimilar to At2g45300: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (HF=8e-121) Module size 6 genes NF 0.21 %ile 29.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1615742_at

Gene name 5-enolpyruvylshikimate-3-phosphate synthase
Homology with Arabidopsis Similar to At2g45300: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (HF=8e-121)

Module size 6 genes

NF 0.21

%ile 29.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays