Co-expression analysis

Gene ID 1615742_at
Gene name 5-enolpyruvylshikimate-3-phosphate synthase
Homology with ArabidopsisSimilar to At2g45300: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (HF=8e-121)
Module size 6 genes
NF 0.21
%ile 29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5375.20.951615742_atCB9706705-enolpyruvylshikimate-3-phosphate synthase-8e-121At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.
0.6787.90.961620412_atCF511306hypothetical protein LOC100247288-6e-10At1g36160ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.5577.30.961614440_atBQ7969223-deoxy-D-arabino-heptulosonate 7-phosphate synthase-2e-53At4g39980DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.3345.70.961610068_atCD711769hypothetical protein LOC100252154-2e-19At2g36670aspartyl protease family proteinO.I.H.G.S.X.
0.1515.60.961618421_atCF604028hypothetical protein LOC100252493-6e-6At3g57560aspartate/glutamate/uridylate kinase family proteinO.I.H.G.S.X.
0.045.20.961611681_atCF513131hypothetical protein LOC100241604-4e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.697.6GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.495.5GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.993.8GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM147692Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation21Link to GEO
2.993.8GSM147699Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation28Link to GEO
2.793.0GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.692.5GSM147687Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation16Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2568.1.S1_s_at, orthologous to the query gene, 1615742_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5683.9Ptp.2568.1.S1_s_atAt2g453003-phosphoshikimate 1-carboxyvinyltransferase-7e-53At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeO.I.H.G.S.X.
0.3559.7Ptp.7532.1.S1_atAt2g45300hypothetical protein-3e-39At2g47110UBQ6O.I.H.G.S.X.
0.2645.2PtpAffx.202195.1.S1_atAt2g45300hypothetical protein-2e-20At3g61140FUS6 (FUSCA 6)O.I.H.G.S.X.
0.2543.6Ptp.374.1.A1_a_atAt2g45300hypothetical protein-2e-36At4g18040EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)O.I.H.G.S.X.
0.2441.8Ptp.5627.1.S1_atAt2g45300hypothetical protein-4e-81At1g07770RPS15A (ribosomal protein s15a)O.I.H.G.S.X.
0.1729.1Ptp.1932.1.A1_atAt2g45300hypothetical protein-4e-1At2g32500-O.I.H.G.S.X.
0.1626.9PtpAffx.145773.1.S1_atAt2g45300hypothetical protein-6e-41At3g15060AtRABA1g (Arabidopsis Rab GTPase homolog A1g)O.I.H.G.S.X.
0.1525.3PtpAffx.32840.2.S1_atAt2g45300--3e-21At1g29470dehydration-responsive protein-relatedO.I.H.G.S.X.
0.1219.6Ptp.2046.1.A1_atAt2g45300--7e-27At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.1016.3PtpAffx.18825.3.A1_atAt2g45300hypothetical protein-3e-15At5g12190RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage