Co-expression analysis

Gene ID	1615742_at
Gene name	5-enolpyruvylshikimate-3-phosphate synthase
Homology with Arabidopsis	Similar to At2g45300: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (HF=8e-121)
Module size	6 genes
NF	0.21
%ile	29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.95	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1620412_at	CF511306	hypothetical protein LOC100247288	-	6e-10	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1618421_at	CF604028	hypothetical protein LOC100252493	-	6e-6	At3g57560	aspartate/glutamate/uridylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.96	1611681_at	CF513131	hypothetical protein LOC100241604	-	4e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.9	93.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
2.9	93.8	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.7	93.0	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.6	92.5	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16

Inter-species module comparison

A co-expression module including the soybean gene, Gma.10326.1.S1_s_at, orthologous to the query gene, 1615742_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	Gma.10326.1.S1_s_at	At2g45300	-	-	6e-60	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.5590.1.S1_a_at	At2g45300	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.5590.1.S1_at	At2g45300	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.90764.1.S1_s_at	At2g45300	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.5458.1.S1_at	At2g45300	-	-	4e-114	At1g10670	ACLA-1	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.93494.1.A1_s_at	At2g45300	chalcone isomerase 4-like	-	3e-4	At5g05270	chalcone-flavanone isomerase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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