Co-expression analysis

Gene ID	1615731_at
Gene name	hypothetical protein LOC100264968
Homology with Arabidopsis	Similar to At2g04030: CR88 (HF=2e-12)
Module size	8 genes
NF	0.35
%ile	51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	61.5	0.93	1615731_at	CD801373	hypothetical protein LOC100264968	-	2e-12	At2g04030	CR88	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1615835_at	BQ792504	hypothetical protein LOC100242745	-	6e-5	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.94	1616839_at	CF203703.1	-	-	1e-1	At5g67110	ALC (ALCATRAZ)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1616848_at	CF511470	hypothetical protein LOC100250406	-	1e+0	At1g24575	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1619999_at	CD799397	hypothetical protein LOC100261404	-	8e-1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1618120_at	BQ793098	hypothetical protein LOC100256073	-	3e-8	At3g49601	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1617057_at	CB978485	hypothetical protein LOC100241489	-	1e+0	At3g09880	ATB' BETA	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.93	1612526_s_at	CF514700	-	-	0	Atcg00540	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
1.9	87.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.8	86.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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