Co-expression analysis

Gene ID	1615704_at
Gene name	hypothetical protein LOC100253600
Homology with Arabidopsis	Similar to At3g22180: zinc finger (DHHC type) family protein (HF=9e-5)
Module size	6 genes
NF	0.51
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.98	1615704_at	CB970180	hypothetical protein LOC100253600	-	9e-5	At3g22180	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1618057_at	CF207962	hypothetical protein LOC100265221	-	4e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1614475_at	CF609346	hypothetical protein LOC100263178	-	9e-18	At5g43930	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1616391_s_at	CD802476	hypothetical protein LOC100261930	-	3e-51	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1612192_s_at	CF518716	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1614715_at	CB972151	hypothetical protein LOC100254787	-	8e-55	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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