Co-expression analysis

Gene ID	1615700_at
Gene name	similar to VPS24.1
Homology with Arabidopsis	Similar to At5g22950: VPS24.1 (HF=2e-8)
Module size	26 genes
NF	0.43
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.98	1615700_at	CA809560	similar to VPS24.1	-	2e-8	At5g22950	VPS24.1	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.99	1607648_s_at	CB348223	hypothetical protein LOC100241287	-	1e-7	At1g08480	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1612973_s_at	CB914724	hypothetical protein LOC100267064	-	7e-43	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1609981_at	CF207945	hypothetical protein LOC100247386	-	2e-11	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1618974_at	CF518903	hypothetical protein LOC100264692	-	9e-40	At5g11900	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.99	1606962_at	CF405430	hypothetical protein LOC100244131	-	4e-13	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1612704_at	CF403828	hypothetical protein LOC100262854	-	5e-66	At2g20130	LCV1 (LIKE COV 1)	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.98	1616805_s_at	CB969852	hypothetical protein LOC100253153	-	1e-11	At1g55170	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.98	1615438_at	CB979703	hypothetical protein LOC100267114	-	1e-25	At1g11475	NRPB10	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1619404_at	CF373115	hypothetical protein LOC100242038	-	4e-38	At1g36980	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.98	1618939_at	CF405354	hypothetical protein LOC100242502	-	1e-3	At2g47970	NPL4 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1619316_s_at	CB970236	hypothetical protein LOC100261243	-	3e-67	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1612642_at	CB970994	hypothetical protein LOC100244706	-	5e+0	At3g43570	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.99	1609030_at	CB343762	hypothetical protein LOC100248369	-	5e-56	At2g36060	ubiquitin-conjugating enzyme family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1620975_at	BQ798236	hypothetical protein LOC100258366	-	7e-55	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1615023_at	BQ793087	hypothetical protein LOC100257110	-	5e+0	At5g13780	GCN5-related N-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1618467_at	CD797847	similar to UBX domain-containing protein	-	7e-3	At4g10790	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1609890_s_at	CA817702	hypothetical protein LOC100252402	-	5e-53	At2g04520	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1614531_s_at	BQ794544	hypothetical protein LOC100252017	-	5e-22	At2g41945	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1609082_at	BQ793687	hypothetical protein LOC100242522	-	8e-5	At5g10350	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1607209_at	CB972845	hypothetical protein LOC100252578	-	5e-29	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1615712_s_at	CB911214	similar to nascent polypeptide associated complex alpha	-	2e-43	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1611219_s_at	CB977634	aspartic proteinase	-	2e-34	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.99	1607141_at	CD712648	hypothetical protein LOC100254376	-	1e-77	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.99	1619569_at	CF211443	hypothetical protein LOC100250036	-	2e-30	At2g26590	adhesion regulating molecule family	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1614315_at	CB978557	similar to SYNC1 (EMBRYO DEFECTIVE 2755); ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding	-	8e-14	At5g56680	SYNC1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.3	90.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.2	89.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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