Co-expression analysis

Gene ID	1615576_at
Gene name
Homology with Arabidopsis	Similar to At1g09840: ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) (HF=1e-147)
Module size	6 genes
NF	0.57
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1615576_at	CB970198	-	-	1e-147	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1618232_at	CF208020	-	-	4e+0	At4g29480	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.95	1619162_at	CF403289	-	-	1e-15	At3g54360	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.94	1612686_at	CB972674	hypothetical protein LOC100255200	-	1e+0	At1g16460	ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.93	1620645_at	CB980222	-	-	2e+0	At5g21125	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1619279_at	CF207445	-	-	4e+0	At3g53250	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.9	100.0	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage