Co-expression analysis

Gene ID	1615574_at
Gene name	hypothetical protein LOC100245304
Homology with Arabidopsis	Similar to At2g45220: pectinesterase family protein (HF=7e-9)
Module size	44 genes
NF	0.31
%ile	44.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	0.92	1615574_at	CB977067	hypothetical protein LOC100245304	-	7e-9	At2g45220	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.95	1622017_at	BQ106735	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.96	1619663_at	CF212160	hypothetical protein LOC100243552	-	4e+0	At4g10920	KELP	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.96	1615608_at	BQ792785	hypothetical protein LOC100248960 /// hypothetical protein LOC100255476	-	1e-22	At4g13050	acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.96	1620148_at	CF210107	hypothetical protein LOC100252338	-	3e-17	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1618322_at	BQ796383	hypothetical protein LOC100245826	-	1e-19	At2g22250	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.94	1622105_x_at	CF203247.1	-	-	6e-1	At5g38300	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1619170_at	CD802165	hypothetical protein LOC100249188	-	6e-12	At5g64500	membrane protein-related	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1613674_at	CK138160.1	hypothetical protein LOC100261822	-	1e-25	At1g72730	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1618490_s_at	CF209633	hypothetical protein LOC100241704	-	4e-4	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1619679_at	CB977224	-	-	1e+0	At3g15690	biotin carboxyl carrier protein of acetyl-CoA carboxylase-related	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.95	1611112_at	CB971308	hypothetical protein LOC100260186	-	9e-34	At2g45790	PMM (PHOSPHOMANNOMUTASE)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	1612278_at	CF074615	hypothetical protein LOC100241738	-	7e-1	At5g37380	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1607123_at	CF204106.1	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.96	1615531_at	CB347122	hypothetical protein LOC100248795	-	8e-20	At1g77260	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1610900_at	CF516848	hypothetical LOC100244581	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1607352_at	CF201433.1	hypothetical protein LOC100263260	-	1e-28	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1606648_at	CF514943	hypothetical protein LOC100257724	-	6e-37	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.94	1613984_at	CD802317	hypothetical protein LOC100243930	-	7e-1	At2g22155	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.95	1610689_at	CB969755	hypothetical LOC100252368	-	8e-1	At1g63055	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1608542_at	CD798715	hypothetical protein LOC100258100	-	2e-2	At5g57460	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1608405_at	CF510592	hypothetical protein LOC100243295	-	4e+0	At5g34881	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1621233_at	CD718955	hypothetical protein LOC100265883	-	2e-12	At2g16930	ribosomal protein L27 family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1614507_at	CF373139	hypothetical protein LOC100250082	-	5e-1	At5g12300	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1616912_at	CF212478	hypothetical protein LOC100246170	-	6e-6	At3g55600	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1618606_at	CF513941	hypothetical protein LOC100258842	-	5e-37	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1612453_at	CF209808	hypothetical protein LOC100248413	-	3e-46	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1621651_at	CB345580	-	-	1e+0	At4g01310	ribosomal protein L5 family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1611675_at	CB970882	hypothetical protein LOC100258891	-	2e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1614227_at	BQ798892	hypothetical protein LOC100255817	-	1e+0	At5g28550	-	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1614765_at	CD003886	hypothetical protein LOC100242287	-	1e-78	At3g59870	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1613718_s_at	CF202933.1	hypothetical protein LOC100241422	-	7e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1614129_at	CB976154	hypothetical protein LOC100249542	-	2e-26	At3g50790	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1620802_at	CB976446	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1612915_at	CF212348	hypothetical protein LOC100247677	-	8e-115	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.93	1617675_at	CF373767	hypothetical protein LOC100245692	-	3e-13	At5g24020	MIND	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1620556_at	CF208984	hypothetical protein LOC100261914	-	4e+0	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.95	1611607_at	CF201459.1	-	-	4e-66	At1g13060	PBE1	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1608294_at	BQ792612	hypothetical LOC100247896	-	1e+0	At5g06230	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1622052_s_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.95	1613367_at	CB975443	-	-	1e+0	At5g26930	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1607450_at	CB343161	hypothetical protein LOC100264463	-	1e+0	At5g11070	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.94	1615845_s_at	CF202159.1	hypothetical protein LOC100265371	-	3e-4	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.95	1611293_at	CF414363	hypothetical protein LOC100267754	-	3e-19	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.6	83.3	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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