Co-expression analysis

Gene ID	1615428_at
Gene name	MADS-box protein 2
Homology with Arabidopsis	Similar to At5g15800: SEP1 (SEPALLATA1) (HF=2e-40)
Module size	6 genes
NF	0.55
%ile	81.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1607719_at	BQ799914	hypothetical protein LOC100253660	-	3e-10	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.97	1607973_at	CB969561	-	-	7e-4	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1621723_at	CA817798	hypothetical protein LOC100248744	-	6e-14	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1617026_at	CD797284	-	-	2e-1	At2g43940	thiol methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1619742_at	AF265562.1	MAD-box transcripion factor	-	2e-16	At3g58780	SHP1 (SHATTERPROOF 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
2.6	92.5	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.4	91.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.1	89.1	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.1	89.1	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
2.0	88.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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