Co-expression analysis

Gene ID	1615408_at
Gene name
Homology with Arabidopsis	Similar to Atmg00940: - (HF=2e-1)
Module size	7 genes
NF	0.39
%ile	57.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.94	1615408_at	CF201095.1	-	-	2e-1	Atmg00940	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1612126_at	CF201785.1	-	-	4e-1	At3g15810	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1617220_at	CK138141.1	-	-	1e-9	At1g65350	UBQ13	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1619472_x_at	CK138141.1	-	-	1e-9	At1g65350	UBQ13	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1613132_s_at	CK136916.1	hypothetical protein LOC100241814	-	6e-9	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1607369_at	CF213621	-	-	1e-3	At1g26940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.95	1621710_at	CF201680.1	-	-	3e-1	At1g59690	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.4	91.3	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.2	89.9	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.0	88.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.0	88.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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