Co-expression analysis

Gene ID 1615390_at
Gene name starch synthase V
Homology with ArabidopsisSimilar to At5g65685: soluble glycogen synthase-related (HF=4e-3)
Module size 7 genes
NF 0.49
%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.90.961615390_atBQ792520starch synthase V-4e-3At5g65685soluble glycogen synthase-relatedO.I.H.G.S.X.
0.7792.30.961611956_atCB348215hypothetical protein LOC100254234-2e-1At3g53630unknown proteinO.I.H.G.S.X.
0.5779.80.971615081_atCF210891hypothetical protein LOC100252838-2e-17At3g16090zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4464.10.961618387_atCF215295hypothetical protein LOC100249044-4e-25At2g01970endomembrane protein 70, putativeO.I.H.G.S.X.
0.4361.50.971618692_atCF212642hypothetical protein LOC100266362-4e-13At1g24560unknown proteinO.I.H.G.S.X.
0.3650.70.971610672_atCF517656hypothetical protein LOC100265163-6e-50At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)O.I.H.G.S.X.
0.2530.50.971611869_atCF609640hypothetical protein LOC100254356-5e-9At2g24830zinc finger (CCCH-type) family protein / D111/G-patch domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.495.5GSM147699Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation28Link to GEO
2.893.4GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.692.5GSM436407V. riparia (VR, PI588259) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM147681Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation10Link to GEO
2.491.3GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.390.7GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.390.7GSM436397V. riparia (VR, PI588259) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage