Co-expression analysis

Gene ID	1615383_at
Gene name	hypothetical protein LOC100256151
Homology with Arabidopsis	Similar to At4g32272: - (HF=1e-3)
Module size	20 genes
NF	0.35
%ile	50.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.96	1615383_at	BQ793432	hypothetical protein LOC100256151	-	1e-3	At4g32272	-	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.97	1616994_at	CF413833	hypothetical protein LOC100255493	-	1e+0	At1g76710	SDG26 (SET DOMAIN GROUP 26)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1611377_at	CF209819	hypothetical protein LOC100263077	-	7e-5	At5g65910	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1609463_at	BQ800090	hypothetical protein LOC100267895	-	3e-1	At2g34720	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1613133_at	BQ795824	similar to putative C-type U1 snRNP	-	2e-31	At4g03120	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1610856_at	CA809292	hypothetical protein LOC100247389	-	9e-27	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1611865_at	CB970887	-	-	1e+0	At5g47100	CBL9	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1620406_s_at	BQ798242	hypothetical protein LOC100245316	-	5e-34	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1606915_at	CD799700	hypothetical protein LOC100267395	-	9e-8	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1615494_at	BQ800152	hypothetical protein LOC100251050	-	1e+0	At2g19720	rps15ab (ribosomal protein S15A B)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1619017_at	CB345874	hypothetical protein LOC100246267	-	4e+0	At5g24890	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1609066_at	CD802207	hypothetical protein LOC100241642	-	1e-7	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1606730_at	CF403493	similar to N-acetylglucosaminyltransferase I	-	3e+0	At1g59670	ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1615030_at	CB350066	similar to EMB2735 (EMBRYO DEFECTIVE 2735)	-	1e-16	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1615418_at	CD009545	hypothetical protein LOC100256204	-	2e-13	At5g02040	PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1618036_at	CF403594	hypothetical protein LOC100264427	-	6e-4	At2g42390	protein kinase C substrate, heavy chain-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1619758_s_at	CB003371	hypothetical protein LOC100254356	-	1e+0	At3g01600	anac044 (Arabidopsis NAC domain containing protein 44)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1606442_at	CF511173	hypothetical protein LOC100246819	-	7e-59	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.98	1621935_at	CD802055	-	-	2e-136	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1610075_at	CF405000	hypothetical protein LOC100260337	-	1e+0	At5g18920	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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