Co-expression analysis

Gene ID	1615370_at
Gene name	hypothetical protein LOC100266022
Homology with Arabidopsis	Similar to At4g08330: unknown protein (HF=6e-2)
Module size	14 genes
NF	0.50
%ile	75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.92	1615370_at	CF372878	hypothetical protein LOC100266022	-	6e-2	At4g08330	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.97	1611168_at	CF208285	hypothetical protein LOC100247366	-	2e-139	At1g50010	TUA2	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1614794_at	CF414317	hypothetical protein LOC100250552	-	1e-30	At4g33400	dem protein-related / defective embryo and meristems protein-related	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.96	1611328_at	CF512075	hypothetical protein LOC100257988	-	3e-57	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.97	1615089_at	CF512548	hypothetical protein LOC100260443	-	1e-140	At2g29550	TUB7	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.95	1617030_at	CF405162	hypothetical protein LOC100268070	-	3e-22	At4g32830	AtAUR1 (ATAURORA1)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1607019_at	CB922746	hypothetical protein LOC100251940	-	3e+0	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.96	1617668_at	CF514659	hypothetical protein LOC100243346	-	5e-4	At4g11080	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1616453_at	CF510913	hypothetical protein LOC100254782	-	2e-58	At1g76540	CDKB2	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1612253_at	CB970527	hypothetical protein LOC100263987	-	4e+0	At3g61370	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.93	1618654_at	CF513468	hypothetical protein LOC100259649	-	9e-1	At4g04614	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1614831_at	CF209966	hypothetical protein LOC100243109	-	7e-8	At5g48600	ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1620600_at	CF373014	hypothetical protein LOC100258054	-	4e+0	At3g26800	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1621574_at	CF511059	hypothetical protein LOC100241803	-	3e-2	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.1	89.1	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.1	89.1	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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