Co-expression analysis

Gene ID 1615340_at
Gene name similar to A_IG002N01.31 gene product
Homology with ArabidopsisSimilar to At4g01050: hydroxyproline-rich glycoprotein family protein (HF=1e-30)
Module size 6 genes
NF 0.62
%ile 89.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981615340_atBQ799199similar to A_IG002N01.31 gene product-1e-30At4g01050hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.6787.90.981610544_s_atCB002886hypothetical protein LOC100246662-1e-25At4g01150unknown proteinO.I.H.G.S.X.
0.5779.80.981611733_s_atBQ797982hypothetical protein LOC100240928-2e-12At1g03130PSAD-2 (photosystem I subunit D-2)O.I.H.G.S.X.
0.5072.70.991617646_atCB340164hypothetical protein LOC100261565-4e-26At5g16400ATF2O.I.H.G.S.X.
0.4464.10.991620744_atCF403966hypothetical protein LOC100248911-2e-6At1g20340DRT112O.I.H.G.S.X.
0.3141.30.981611683_s_atBQ799199similar to A_IG002N01.31 gene product-1e-30At4g01050hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.199.1GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
5.798.5GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.697.6GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.395.2GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM436366Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436406V. riparia (VR, PI588259) LD, 15h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436407V. riparia (VR, PI588259) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436365Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.15895.1.A1_at, orthologous to the query gene, 1615340_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4759.9Zm.15895.1.A1_atAt4g01050hypothetical protein LOC100192599-3e+0At3g26400EIF4B1O.I.H.G.S.X.
0.8094.0Zm.6941.1.A1_atAt4g01050--4e-1At3g46770transcriptional factor B3 family proteinO.I.H.G.S.X.
0.6785.8Zm.18115.1.A1_atAt4g01050ring domain containing protein-5e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6481.7Zm.12656.1.S1_atAt4g01050--5e+0At5g07020proline-rich family proteinO.I.H.G.S.X.
0.6381.1Zm.7569.1.A1_atAt4g01050--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.6381.1Zm.8175.1.A1_atAt4g01050--5e-6At2g39350ABC transporter family proteinO.I.H.G.S.X.
0.6279.8Zm.7728.1.A1_atAt4g01050--3e-3At2g33700protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.5976.1Zm.3712.1.S1_atAt4g01050Hypothetical protein LOC100216583-6e-2At1g69430unknown proteinO.I.H.G.S.X.
0.5674.4Zm.16076.1.S1_a_atAt4g01050hypothetical protein LOC100191361-8e-4At5g63220unknown proteinO.I.H.G.S.X.
0.5267.3Zm.7868.1.S1_atAt4g01050hypothetical protein LOC100216779-4e-1At1g15390PDF1A (PEPTIDE DEFORMYLASE 1A)O.I.H.G.S.X.
0.4861.3Zm.5218.1.A1_atAt4g01050--3e+0At2g30130ASL5O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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