Co-expression analysis

Gene ID	1615265_at
Gene name	hypothetical protein LOC100262252
Homology with Arabidopsis	Similar to At4g14160: transport protein, putative (HF=2e-5)
Module size	27 genes
NF	0.35
%ile	50.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	93.7	0.98	1615265_at	CF514099	hypothetical protein LOC100262252	-	2e-5	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.98	1620312_at	CB349051	hypothetical protein LOC100254135	-	7e-56	At1g49040	SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1615636_at	CB979153	hypothetical protein LOC100264871	-	5e+0	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1616981_at	CB971105	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1622462_at	CB916510	hypothetical protein LOC100265163	-	4e-23	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1620700_at	BQ799947	hypothetical protein LOC100261522	-	4e-20	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1616036_at	CF513213	hypothetical protein LOC100241363	-	7e-4	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1614620_at	CF404986	hypothetical protein LOC100249044	-	5e-37	At5g37310	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	AFFX-Vvi-actin-3_c2_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.99	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	AFFX-Vvi-actin-3_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.99	AFFX-Vvi-actin-3_c6_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1619318_at	BQ793250	hypothetical protein LOC100248394	-	5e+0	At5g65840	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.99	1618063_at	CB980274	hypothetical protein LOC100259885	-	7e-6	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1616644_at	CK136917.1	hypothetical protein LOC100250187	-	5e-34	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1618759_at	CB348270	hypothetical protein LOC100256813	-	1e+0	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1610761_at	CF406038	hypothetical protein LOC100244127	-	6e-68	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.99	1621991_at	CB978460	hypothetical protein LOC100243393	-	1e-1	At2g41060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1617329_at	BQ798056	hypothetical protein LOC100255368	-	5e-49	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1615084_at	CB342911	hypothetical protein LOC100252857	-	8e-9	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.99	1612360_at	CB970071	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.99	1619414_at	CF607341	hypothetical protein LOC100241708	-	1e-8	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1619398_at	CF215106	hypothetical protein LOC100261913	-	4e-135	At3g08550	KOB1 (KOBITO)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1607119_at	CD799254	hypothetical protein LOC100247980	-	6e-71	At1g78920	AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1615685_at	BQ797067	hypothetical protein LOC100250471	-	1e+0	At5g15230	GASA4 (GAST1 PROTEIN HOMOLOG 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.7	84.7	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.7	84.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
1.7	84.7	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
1.7	84.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.7	84.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.6	83.3	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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