Co-expression analysis

Gene ID	1615231_at
Gene name	hypothetical protein LOC100254995
Homology with Arabidopsis	Similar to At2g31680: AtRABA5d (Arabidopsis Rab GTPase homolog A5d) (HF=1e-19)
Module size	6 genes
NF	0.04
%ile	9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.96	1615231_at	CF607773	hypothetical protein LOC100254995	-	1e-19	At2g31680	AtRABA5d (Arabidopsis Rab GTPase homolog A5d)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1617454_at	BQ798893	hypothetical protein LOC100261773	-	3e+0	At3g10700	GHMP kinase family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1608523_at	CB339561	hypothetical protein LOC100253981	-	4e+0	At5g14340	AtMYB40 (myb domain protein 40)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.96	1610794_at	CB970276	hypothetical protein LOC100254003	-	2e-46	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.96	1607962_at	CB973840	similar to pentatricopeptide repeat-containing protein At1g32415	-	7e-12	At1g32410	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.95	1606799_s_at	CB968910	hypothetical protein LOC100253273 /// hypothetical protein LOC100248145	-	4e-101	At1g04410	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
4.6	97.6	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.4	97.3	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
4.4	97.3	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
4.3	97.2	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
4.2	97.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.9	96.6	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
3.7	96.2	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
3.6	96.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.5	95.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage