Co-expression analysis

Gene ID 1615194_at
Gene name hypothetical protein LOC100256025
Homology with ArabidopsisSimilar to At1g77940: 60S ribosomal protein L30 (RPL30B) (HF=3e-29)
Module size 6 genes
NF 0.68
%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.991615194_atCF373310hypothetical protein LOC100256025-3e-29At1g7794060S ribosomal protein L30 (RPL30B)O.I.H.G.S.X.
0.6787.90.991621149_atCF514701similar to 60S ribosomal protein L19-3e-79At1g02780emb2386 (embryo defective 2386)O.I.H.G.S.X.
0.6787.90.991610139_s_atCF211851hypothetical protein LOC100253227-2e-24At4g1045060S ribosomal protein L9 (RPL90D)O.I.H.G.S.X.
0.5375.20.991610092_atBQ794603hypothetical protein LOC100250286-2e-18At5g1838040S ribosomal protein S16 (RPS16C)O.I.H.G.S.X.
0.4464.10.991621971_x_atCF205851.1hypothetical protein LOC100248226-6e-86At5g0296040S ribosomal protein S23 (RPS23B)O.I.H.G.S.X.
0.4464.10.991610193_atCF214569hypothetical protein LOC100242819-1e-53At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.8GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.797.7GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.297.1GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.196.9GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.796.2GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.194.6GSM299458D_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.194.6GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.194.6GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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