CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1615170_s_at

Gene name hypothetical protein LOC100258503
Homology with Arabidopsis Similar to At3g20750: zinc finger (GATA type) family protein (HF=6e+0)

Module size 6 genes

NF 0.44

%ile 66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 0.97 1615170_s_at CB005173 hypothetical protein LOC100258503 - 6e+0 At3g20750 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.50 72.7 0.97 1614808_at BQ792403 hypothetical protein LOC100253735 - 2e-15 At1g53280 DJ-1 family protein O.I. H.G. S.X.
0.46 66.5 0.98 1619598_at BQ792469 hypothetical protein LOC100249152 - 1e+0 At4g03170 DNA binding O.I. H.G. S.X.
0.40 57.7 0.97 1619096_at CB969616 hypothetical protein LOC100262646 - 1e-7 At4g24270 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.37 51.7 0.97 1620256_at AF021808.1 sucrose transporter-like - 2e-29 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) O.I. H.G. S.X.
0.27 34.0 0.97 1622794_at CF211821 hypothetical protein LOC100254649 - 3e-6 At2g37200 integral membrane protein, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.94	1609079_at	BQ796278	hypothetical protein LOC100247244	-	5e-18	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.
0.44	64.1	0.95	1611506_x_at	CK136902.1	hypothetical protein LOC100258503	-	4e-3	At2g02060	transcription factor	O.I.	H.G.	S.X.
0.44	64.1	0.95	1617166_s_at	CA808041	ripening-related protein-like	-	4e-1	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.
0.44	64.1	0.96	1613158_at	CB349843	-	-	9e-36	Atmg00160	-	O.I.	H.G.	S.X.
0.44	64.1	0.97	1612188_at	CB910708	hypothetical protein LOC100258259	-	3e-1	At5g54370	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.
0.44	64.1	0.97	1612787_at	BQ798474	hypothetical protein LOC100241927	-	4e+0	At5g58790	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.93	1621396_at	CF514715	hypothetical protein LOC100243434	-	5e-13	At4g34000	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	O.I.	H.G.	S.X.
0.40	57.7	0.93	1616369_at	CF371742	hypothetical protein LOC100248235	-	3e-55	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	O.I.	H.G.	S.X.
0.40	57.7	0.96	1606573_s_at	BQ794579	hypothetical protein LOC100249473	-	3e-6	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.40	57.7	0.96	1609519_at	CF603152	hypothetical protein LOC100259523	-	7e-5	At3g01820	adenylate kinase family protein	O.I.	H.G.	S.X.
0.36	50.7	0.93	1610799_at	CF414237	hypothetical protein LOC100266471	-	2e-7	At4g33180	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.33	45.7	0.95	1612696_s_at	CD799639	-	-	5e+0	At1g26470	-	O.I.	H.G.	S.X.
0.33	45.7	0.96	1619349_at	CF608419	hypothetical protein LOC100259523	-	1e+0	At4g37720	ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR)	O.I.	H.G.	S.X.
0.31	41.3	0.97	1620209_at	CF404507	hypothetical protein LOC100258996	-	8e-87	At5g54800	GPT1	O.I.	H.G.	S.X.
0.29	37.7	0.94	1621194_at	CF405928	-	-	1e-6	At5g04130	DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative	O.I.	H.G.	S.X.
0.29	37.7	0.95	1612439_at	CA816012	hypothetical LOC100243800	-	3e-1	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	O.I.	H.G.	S.X.
0.29	37.7	0.96	1615424_at	CB343739	hypothetical protein LOC100266678	-	5e-1	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.
0.27	34.0	0.95	1608189_s_at	BQ800538	hypothetical protein LOC100247958	-	1e-21	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	O.I.	H.G.	S.X.
0.25	30.5	0.96	1616503_s_at	CB973211	temperature-induced lipocalin	-	2e-12	At5g58070	TIL (TEMPERATURE-INDUCED LIPOCALIN)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 94.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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