Co-expression analysis

Gene ID	1615170_s_at
Gene name	hypothetical protein LOC100258503
Homology with Arabidopsis	Similar to At3g20750: zinc finger (GATA type) family protein (HF=6e+0)
Module size	6 genes
NF	0.44
%ile	66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.97	1615170_s_at	CB005173	hypothetical protein LOC100258503	-	6e+0	At3g20750	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1614808_at	BQ792403	hypothetical protein LOC100253735	-	2e-15	At1g53280	DJ-1 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1619598_at	BQ792469	hypothetical protein LOC100249152	-	1e+0	At4g03170	DNA binding	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1619096_at	CB969616	hypothetical protein LOC100262646	-	1e-7	At4g24270	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1620256_at	AF021808.1	sucrose transporter-like	-	2e-29	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1622794_at	CF211821	hypothetical protein LOC100254649	-	3e-6	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.210487.1.S1_at, orthologous to the query gene, 1615170_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	PtpAffx.210487.1.S1_at	At3g20750	hypothetical protein	-	2e+0	Atmg01030	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.4633.3.S1_at	At3g20750	-	-	2e-57	At1g07820	histone H4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.249.373.A1_s_at	At3g20750	hypothetical protein	-	4e-9	At5g38430	ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.2725.1.A1_at	At3g20750	hypothetical protein	-	4e-175	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.212363.1.S1_s_at	At3g20750	hypothetical protein	-	3e-59	At1g35510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.2146.1.S1_at	At3g20750	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.220978.1.S1_s_at	At3g20750	hypothetical protein	-	8e-33	At3g17770	dihydroxyacetone kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.219147.1.S1_at	At3g20750	-	-	4e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.22433.2.S1_a_at	At3g20750	hypothetical protein	-	2e-2	At5g26320	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.216732.1.S1_s_at	At3g20750	hypothetical protein	-	1e-1	At3g16230	RNA binding / catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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