CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1615170_s_at

Gene name hypothetical protein LOC100258503
Homology with Arabidopsis Similar to At3g20750: zinc finger (GATA type) family protein (HF=6e+0)

Module size 6 genes

NF 0.44

%ile 66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 0.97 1615170_s_at CB005173 hypothetical protein LOC100258503 - 6e+0 At3g20750 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.50 72.7 0.97 1614808_at BQ792403 hypothetical protein LOC100253735 - 2e-15 At1g53280 DJ-1 family protein O.I. H.G. S.X.
0.46 66.5 0.98 1619598_at BQ792469 hypothetical protein LOC100249152 - 1e+0 At4g03170 DNA binding O.I. H.G. S.X.
0.40 57.7 0.97 1619096_at CB969616 hypothetical protein LOC100262646 - 1e-7 At4g24270 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.37 51.7 0.97 1620256_at AF021808.1 sucrose transporter-like - 2e-29 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) O.I. H.G. S.X.
0.27 34.0 0.97 1622794_at CF211821 hypothetical protein LOC100254649 - 3e-6 At2g37200 integral membrane protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 94.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the rice gene, Os11g0294000, orthologous to the query gene, 1615170_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os11g0294000 At3g20750 - - 2e+0 At3g01260 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase O.I. H.G. S.X.
0.73 91.1 Os10g0453100 At3g20750 - - 3e+0 At2g39400 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.73 91.1 Os11g0238000 At3g20750 - - 1e+0 At3g57250 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.63 82.7 Os10g0182800 At3g20750 - - 2e+0 At5g38160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.61 81.2 Os10g0398000 At3g20750 - - 4e+0 At5g40970 unknown protein O.I. H.G. S.X.
0.28 31.1 Os02g0513300 At3g20750 - - 3e+0 At5g65165 SDH2-3 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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