Co-expression analysis

Gene ID	1615170_s_at
Gene name	hypothetical protein LOC100258503
Homology with Arabidopsis	Similar to At3g20750: zinc finger (GATA type) family protein (HF=6e+0)
Module size	6 genes
NF	0.44
%ile	66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.97	1615170_s_at	CB005173	hypothetical protein LOC100258503	-	6e+0	At3g20750	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1614808_at	BQ792403	hypothetical protein LOC100253735	-	2e-15	At1g53280	DJ-1 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1619598_at	BQ792469	hypothetical protein LOC100249152	-	1e+0	At4g03170	DNA binding	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1619096_at	CB969616	hypothetical protein LOC100262646	-	1e-7	At4g24270	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1620256_at	AF021808.1	sucrose transporter-like	-	2e-29	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1622794_at	CF211821	hypothetical protein LOC100254649	-	3e-6	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.33050.1.S1_x_at, orthologous to the query gene, 1615170_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	GmaAffx.33050.1.S1_x_at	At3g20750	-	-	3e-2	At2g41410	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	GmaAffx.12714.1.A1_at	At3g20750	-	-	2e+0	At2g35090	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.55781.1.A1_s_at	At3g20750	-	-	3e+0	At4g26810	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.80258.1.S1_at	At3g20750	-	-	7e-1	At4g17580	Bax inhibitor-1 family protein / BI-1 family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.11781.1.S1_s_at	At3g20750	-	-	8e+0	At3g04430	anac049 (Arabidopsis NAC domain containing protein 49)	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.33050.1.S1_at	At3g20750	-	-	3e-2	At2g41410	calmodulin, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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