Co-expression analysis

Gene ID 1615170_s_at
Gene name hypothetical protein LOC100258503
Homology with ArabidopsisSimilar to At3g20750: zinc finger (GATA type) family protein (HF=6e+0)
Module size 6 genes
NF 0.44
%ile 66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5577.30.971615170_s_atCB005173hypothetical protein LOC100258503-6e+0At3g20750zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.5072.70.971614808_atBQ792403hypothetical protein LOC100253735-2e-15At1g53280DJ-1 family proteinO.I.H.G.S.X.
0.4666.50.981619598_atBQ792469hypothetical protein LOC100249152-1e+0At4g03170DNA bindingO.I.H.G.S.X.
0.4057.70.971619096_atCB969616hypothetical protein LOC100262646-1e-7At4g24270RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3751.70.971620256_atAF021808.1sucrose transporter-like-2e-29At1g09960SUT4 (SUCROSE TRANSPORTER 4)O.I.H.G.S.X.
0.2734.00.971622794_atCF211821hypothetical protein LOC100254649-3e-6At2g37200integral membrane protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.294.9GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.390.7GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.390.7GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g20750, orthologous to the query gene, 1615170_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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