Co-expression analysis

Gene ID 1615153_at
Gene name
Homology with ArabidopsisSimilar to At1g60630: leucine-rich repeat family protein (HF=2e-8)
Module size 6 genes
NF 0.08
%ile 15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.871615153_atCD715305--2e-8At1g60630leucine-rich repeat family proteinO.I.H.G.S.X.
0.4057.70.981607756_s_atCF519234hypothetical protein LOC100241574-3e-40At3g08510ATPLC2 (PHOSPHOLIPASE C 2)O.I.H.G.S.X.
0.2937.70.961621000_atCF209896hypothetical protein LOC100245551-1e+0At1g06180ATMYB13 (MYB DOMAIN PROTEIN 13)O.I.H.G.S.X.
0.1414.40.981614120_atCB349861--4e-3At5g40550unknown proteinO.I.H.G.S.X.
0.1414.40.981612757_atCD801743hypothetical protein LOC100241266-1e+0At2g32560F-box family proteinO.I.H.G.S.X.
0.023.20.961615115_atCD801173hypothetical protein LOC100244778-1e-38At5g05080UBC22 (ubiquitin-conjugating enzyme 22)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.099.1GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
4.397.2GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.692.5GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.491.3GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.491.3GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.289.9GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.088.2GSM436420V. riparia (VR, PI588259) SD, 13h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM147734Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation63Link to GEO
1.987.2GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig18208_at, orthologous to the query gene, 1615153_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7589.5Contig18208_atAt1g60630--2e-8At2g26730leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.8694.8HW06D22u_atAt1g60630--6e-5At1g61250SC3 (SECRETORY CARRIER 3)O.I.H.G.S.X.
0.7589.5Contig17095_atAt1g60630--4e-5At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.7589.5Contig2560_atAt1g60630--4e+0At3g51880HMGB1 (HIGH MOBILITY GROUP B 1)O.I.H.G.S.X.
0.7187.1HW03K15u_atAt1g60630--1e-2At3g45920receptor protein kinase-relatedO.I.H.G.S.X.
0.6784.7EBro08_SQ011_N18_atAt1g60630--4e+0At3g46613RTFL4 (ROTUNDIFOLIA LIKE 4)O.I.H.G.S.X.
0.6077.3HR01G01r_atAt1g60630--4e+0At3g22560GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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