Co-expression analysis

Gene ID 1615092_at
Gene name similar to ring domain containing protein
Homology with ArabidopsisSimilar to At4g03510: RMA1 (HF=1e-8)
Module size 26 genes
NF 0.35
%ile 50.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8193.70.941615092_atCB349360similar to ring domain containing protein-1e-8At4g03510RMA1O.I.H.G.S.X.
0.5273.90.951616688_s_atCB342776--0Atcg01050-O.I.H.G.S.X.
0.4767.70.961614503_atCB972598--0Atcg00740-O.I.H.G.S.X.
0.4767.70.971608138_s_atCB342671--0Atcg00120-O.I.H.G.S.X.
0.4564.60.961615820_atBQ796436hypothetical protein LOC100263593-1e-6At3g07270GTP cyclohydrolase IO.I.H.G.S.X.
0.4564.60.961618414_atBQ793409hypothetical protein LOC100243384-9e-33At4g30690translation initiation factor 3 (IF-3) family proteinO.I.H.G.S.X.
0.4158.70.951620056_s_atCB008823hypothetical protein LOC100249424-2e-15At3g60340palmitoyl protein thioesterase family proteinO.I.H.G.S.X.
0.4158.70.961610039_s_atCA817529similar to NADH-plastoquinone oxidoreductase subunit K-0Atcg00480-O.I.H.G.S.X.
0.4057.70.951607048_atCB914076hypothetical protein LOC100249101-7e-28At1g10500ATCPISCA (chloroplast-localized IscA-like protein)O.I.H.G.S.X.
0.3954.90.951617060_s_atCB977776glutathione reductase (NADPH)-3e-84At3g54660GR (GLUTATHIONE REDUCTASE)O.I.H.G.S.X.
0.3954.90.951613394_atCB342776--0Atcg01050-O.I.H.G.S.X.
0.3650.70.961620681_atCB001091hypothetical protein LOC100244005-1e-9At5g11330monooxygenase family proteinO.I.H.G.S.X.
0.3650.70.971607055_atCB004334hypothetical protein LOC100264430-2e-2At1g44790ChaC-like family proteinO.I.H.G.S.X.
0.3446.80.951621789_s_atCF209826hypothetical protein LOC100255632-6e-16At5g53050hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3345.70.951622657_s_atCF603725hypothetical protein LOC100247816-8e-21At3g21390mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3243.10.971618020_x_atCB972570hypothetical protein LOC100267942-8e-4At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.3141.30.961616888_atCF403623similar to lactoylglutathione lyase, putative / glyoxalase I, putative-3e-73At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.3039.40.971611652_s_atCF208983hypothetical protein LOC100264196-2e-53At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.2837.70.961613555_atCB346761hypothetical protein LOC100255874-2e-2At2g45930unknown proteinO.I.H.G.S.X.
0.2632.00.961615149_atCD009120hypothetical protein LOC100248175-4e+0At5g64200ATSC35O.I.H.G.S.X.
0.2530.50.971612332_atCF511577--2e-21At1g08110lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.2530.50.951610711_s_atCF606982--4e+0At4g28085unknown proteinO.I.H.G.S.X.
0.2428.70.971620133_atCA816897hypothetical protein LOC100256241-3e-2At4g13220unknown proteinO.I.H.G.S.X.
0.2327.50.961621483_atBQ796003hypothetical protein LOC100254964-2e-6At1g12810proline-rich family proteinO.I.H.G.S.X.
0.1718.20.971613227_atCB912270hypothetical protein LOC100247606-3e+0At5g62575unknown proteinO.I.H.G.S.X.
0.1616.70.961620973_s_atBQ798594hypothetical protein LOC100265749-4e+0At3g22415unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.189.1GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.088.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.088.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.987.2GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
1.886.0GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
1.886.0GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.886.0GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.886.0GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.886.0GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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