Co-expression analysis

Gene ID	1615092_at
Gene name	similar to ring domain containing protein
Homology with Arabidopsis	Similar to At4g03510: RMA1 (HF=1e-8)
Module size	26 genes
NF	0.35
%ile	50.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	93.7	0.94	1615092_at	CB349360	similar to ring domain containing protein	-	1e-8	At4g03510	RMA1	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1616688_s_at	CB342776	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.96	1614503_at	CB972598	-	-	0	Atcg00740	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1608138_s_at	CB342671	-	-	0	Atcg00120	-	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1615820_at	BQ796436	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1618414_at	BQ793409	hypothetical protein LOC100243384	-	9e-33	At4g30690	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.95	1620056_s_at	CB008823	hypothetical protein LOC100249424	-	2e-15	At3g60340	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1607048_at	CB914076	hypothetical protein LOC100249101	-	7e-28	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.95	1617060_s_at	CB977776	glutathione reductase (NADPH)	-	3e-84	At3g54660	GR (GLUTATHIONE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.95	1613394_at	CB342776	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1620681_at	CB001091	hypothetical protein LOC100244005	-	1e-9	At5g11330	monooxygenase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1607055_at	CB004334	hypothetical protein LOC100264430	-	2e-2	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1621789_s_at	CF209826	hypothetical protein LOC100255632	-	6e-16	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1622657_s_at	CF603725	hypothetical protein LOC100247816	-	8e-21	At3g21390	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1618020_x_at	CB972570	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1616888_at	CF403623	similar to lactoylglutathione lyase, putative / glyoxalase I, putative	-	3e-73	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1611652_s_at	CF208983	hypothetical protein LOC100264196	-	2e-53	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1613555_at	CB346761	hypothetical protein LOC100255874	-	2e-2	At2g45930	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1615149_at	CD009120	hypothetical protein LOC100248175	-	4e+0	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1612332_at	CF511577	-	-	2e-21	At1g08110	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1610711_s_at	CF606982	-	-	4e+0	At4g28085	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1620133_at	CA816897	hypothetical protein LOC100256241	-	3e-2	At4g13220	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.96	1621483_at	BQ796003	hypothetical protein LOC100254964	-	2e-6	At1g12810	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1613227_at	CB912270	hypothetical protein LOC100247606	-	3e+0	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.96	1620973_s_at	BQ798594	hypothetical protein LOC100265749	-	4e+0	At3g22415	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.0	88.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.9	87.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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