Co-expression analysis

Gene ID 1615073_at
Gene name GAGA-binding transcriptional activator BBR/BPC6-like
Homology with ArabidopsisSimilar to At5g42520: ATBPC6 (HF=1e-40)
Module size 6 genes
NF 0.64
%ile 90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4464.10.981615073_atCD798908GAGA-binding transcriptional activator BBR/BPC6-like-1e-40At5g42520ATBPC6O.I.H.G.S.X.
0.8093.60.981609850_atCB979570hypothetical protein LOC100244857-3e-7At1g76510ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.7390.80.981611616_atCF406000hypothetical protein LOC100250213-8e-12At2g30530unknown proteinO.I.H.G.S.X.
0.6787.90.981609948_atBQ793462hypothetical protein LOC100259405-3e-1At3g21710unknown proteinO.I.H.G.S.X.
0.5980.60.981614891_s_atBQ792530hypothetical protein LOC100251643-2e-25At3g56680nucleic acid bindingO.I.H.G.S.X.
0.3853.60.981621094_s_atCF214762similar to AT4g27960-1e-72At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.90.971608575_atCF403126hypothetical protein LOC100263650-2e+0At5g65250unknown proteinO.I.H.G.S.X.
0.6787.90.981620870_s_atBQ794210hypothetical protein LOC100251175-3e-18At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.6384.30.971618932_s_atCA815730hypothetical protein LOC100267614-6e-65At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.6081.90.971611500_s_atCF516483hypothetical protein LOC100243519-2e+0At1g54230DNA bindingO.I.H.G.S.X.
0.5779.80.971615940_atCB914548hypothetical protein LOC100245741-2e-6At5g64780-O.I.H.G.S.X.
0.5577.30.961617567_atCB003954--4e-1At3g12490cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.5072.70.971621344_atCF212990hypothetical protein LOC100264728-3e-6At2g30580DRIP2 (DREB2A-INTERACTING PROTEIN 2)O.I.H.G.S.X.
0.5072.70.981617217_atCB342098hypothetical protein LOC100241455-2e-31At2g46260BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.4767.70.961617037_atCF511184hypothetical protein LOC100264477-5e+0At5g65390AGP7O.I.H.G.S.X.
0.4666.50.981618634_atCF211062hypothetical protein LOC100248740-5e-1At1g64355unknown proteinO.I.H.G.S.X.
0.4464.10.971611242_atCF369027hypothetical protein LOC100248144-4e+0At4g18500unknown proteinO.I.H.G.S.X.
0.4464.10.991616997_s_atCB977228hypothetical protein LOC100261822-0At1g54270EIF4A-2O.I.H.G.S.X.
0.4260.10.951621426_atCD720363--2e-15At4g08540unknown proteinO.I.H.G.S.X.
0.4057.70.981612894_atCD012284hypothetical protein LOC100252013-2e-28At4g39100SHL1 (short life)O.I.H.G.S.X.
0.4057.70.981621875_s_atCB009610hypothetical protein LOC100262179-3e-42At5g22330RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)O.I.H.G.S.X.
0.3853.60.971618825_atCF511618hypothetical protein LOC100266234-8e-19At3g59690IQD13 (IQ-domain 13)O.I.H.G.S.X.
0.3751.70.981609308_atCF603016--2e+0At4g03380-O.I.H.G.S.X.
0.3650.70.961620868_atCF203725.1--1e+0At5g56810F-box family proteinO.I.H.G.S.X.
0.3650.70.961609994_atCB911877--5e-7At1g09620ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.3650.70.971613145_atCF215652hypothetical protein LOC100255313-6e-22At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3345.70.971619851_atCB978591hypothetical protein LOC100267367-2e+0At4g30880protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3345.70.981612779_atCF207462hypothetical protein LOC100248098-4e-61At1g60995unknown proteinO.I.H.G.S.X.
0.3141.30.971608082_s_atCF403706--8e-1At2g42280basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3141.30.971620743_atCF610054hypothetical protein LOC100241913-4e-1At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3141.30.981616817_atCF206346.1hypothetical protein LOC100267328-9e-11At5g37370ATSRL1O.I.H.G.S.X.
0.3039.40.961606502_atBQ797201hypothetical protein LOC100266630-2e-96At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.3039.40.971608884_atCD717733hypothetical protein LOC100266964-3e-1At3g54790armadillo/beta-catenin repeat family protein / U-box domain-containing proteinO.I.H.G.S.X.
0.3039.40.981622255_atBQ797861--2e-2At1g27350-O.I.H.G.S.X.
0.3039.40.981613208_atCF209522hypothetical protein LOC100267894-8e-38At1g16610SR45O.I.H.G.S.X.
0.2937.70.961618705_s_atAF236127.1catalase /// hypothetical protein LOC100242769-2e-82At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.2937.70.971612600_atCF372833hypothetical protein LOC100243464 /// hypothetical protein LOC100255125-6e-43At5g48530unknown proteinO.I.H.G.S.X.
0.2734.00.981611629_s_atCB339419hypothetical protein LOC100247481-9e-2At3g25910zinc ion bindingO.I.H.G.S.X.
0.2530.50.941617049_atCB009610--3e-42At5g22330RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)O.I.H.G.S.X.
0.2530.50.961622083_atBQ797832hypothetical protein LOC100265922-5e-6At4g34430CHB3O.I.H.G.S.X.
0.2530.50.981622885_atCF510943hypothetical protein LOC100254750-8e-2At3g50750brassinosteroid signalling positive regulator-relatedO.I.H.G.S.X.
0.2530.50.981620927_atCF216010hypothetical protein LOC100252969-4e-1At5g09660PMDH2 (peroxisomal NAD-malate dehydrogenase 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.598.4GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.897.8GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.597.5GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.597.5GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.595.7GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287890Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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