Co-expression analysis

Gene ID 1615073_at
Gene name GAGA-binding transcriptional activator BBR/BPC6-like
Homology with ArabidopsisSimilar to At5g42520: ATBPC6 (HF=1e-40)
Module size 6 genes
NF 0.64
%ile 90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4464.10.981615073_atCD798908GAGA-binding transcriptional activator BBR/BPC6-like-1e-40At5g42520ATBPC6O.I.H.G.S.X.
0.8093.60.981609850_atCB979570hypothetical protein LOC100244857-3e-7At1g76510ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.7390.80.981611616_atCF406000hypothetical protein LOC100250213-8e-12At2g30530unknown proteinO.I.H.G.S.X.
0.6787.90.981609948_atBQ793462hypothetical protein LOC100259405-3e-1At3g21710unknown proteinO.I.H.G.S.X.
0.5980.60.981614891_s_atBQ792530hypothetical protein LOC100251643-2e-25At3g56680nucleic acid bindingO.I.H.G.S.X.
0.3853.60.981621094_s_atCF214762similar to AT4g27960-1e-72At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.598.4GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.897.8GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.597.5GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.597.5GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.595.7GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287890Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.600.1.A1_at, orthologous to the query gene, 1615073_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6279.8ZmAffx.600.1.A1_atAt5g42520--3e+0At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.5674.4Zm.5419.1.A1_atAt5g42520phosphatidate cytidylyltransferase-6e-18At1g62430ATCDS1O.I.H.G.S.X.
0.4048.5Zm.3715.1.A1_atAt5g42520--9e-56At5g11200DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3131.6Zm.16748.1.A1_atAt5g42520OB-fold nucleic acid binding domain containing protein-1e-1At2g33845DNA-binding protein-relatedO.I.H.G.S.X.
0.2928.1Zm.5012.1.A1_atAt5g42520auxin response factor 75-9e-1At3g45050unknown proteinO.I.H.G.S.X.
0.2724.6Zm.3714.1.A1_atAt5g42520eukaryotic translation initiation factor 3 subunit 3-2e-32At1g10840TIF3H1O.I.H.G.S.X.
0.2521.3Zm.18992.1.A1_atAt5g42520--4e-1At5g20370serine-rich protein-relatedO.I.H.G.S.X.
0.2216.9Zm.14687.1.S1_atAt5g42520hypothetical protein LOC100272307-3e-1At2g15770glycine-rich proteinO.I.H.G.S.X.
0.1912.8Zm.4201.1.A1_atAt5g42520hypothetical protein LOC100274325-2e+0At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.136.8Zm.5834.1.A1_a_atAt5g42520--6e+0At4g01260transcription regulatorO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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