Co-expression analysis

Gene ID 1615073_at
Gene name GAGA-binding transcriptional activator BBR/BPC6-like
Homology with ArabidopsisSimilar to At5g42520: ATBPC6 (HF=1e-40)
Module size 6 genes
NF 0.64
%ile 90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4464.10.981615073_atCD798908GAGA-binding transcriptional activator BBR/BPC6-like-1e-40At5g42520ATBPC6O.I.H.G.S.X.
0.8093.60.981609850_atCB979570hypothetical protein LOC100244857-3e-7At1g76510ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.7390.80.981611616_atCF406000hypothetical protein LOC100250213-8e-12At2g30530unknown proteinO.I.H.G.S.X.
0.6787.90.981609948_atBQ793462hypothetical protein LOC100259405-3e-1At3g21710unknown proteinO.I.H.G.S.X.
0.5980.60.981614891_s_atBQ792530hypothetical protein LOC100251643-2e-25At3g56680nucleic acid bindingO.I.H.G.S.X.
0.3853.60.981621094_s_atCF214762similar to AT4g27960-1e-72At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.598.4GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.897.8GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.597.5GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.597.5GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.595.7GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287890Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2668.2.A1_at, orthologous to the query gene, 1615073_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8091.5Gma.2668.2.A1_atAt5g42520--4e-6At5g42520ATBPC6O.I.H.G.S.X.
0.6786.1Gma.9522.1.S1_atAt5g42520MYB transcription factor MYB107-6e-7At1g17520DNA-binding protein, putativeO.I.H.G.S.X.
0.6080.7Gma.4225.1.S1_a_atAt5g42520--6e-13At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.5071.7Gma.8062.1.A1_a_atAt5g42520--1e-7At2g21630transport protein, putativeO.I.H.G.S.X.
0.4360.6Gma.1066.1.S1_atAt5g42520--4e-67At3g13670protein kinase family proteinO.I.H.G.S.X.
0.3346.1GmaAffx.8927.1.S1_atAt5g42520--5e-32At4g39100SHL1 (short life)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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