Co-expression analysis

Gene ID	1614987_at
Gene name	hypothetical protein LOC100241685
Homology with Arabidopsis	Similar to At1g51340: MATE efflux family protein (HF=1e-15)
Module size	19 genes
NF	0.40
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.92	1614987_at	CF609746	hypothetical protein LOC100241685	-	1e-15	At1g51340	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.94	1616183_at	CF405742	hypothetical protein LOC100257468	-	3e-1	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.94	1612181_at	CF518786	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1614416_at	CD013543	hypothetical protein LOC100244960	-	8e-6	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1615628_at	CB345697	hypothetical protein LOC100244782	-	5e-1	At4g10080	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1614834_at	BQ794614	vacuolar pyrophosphatase	-	5e-156	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1621516_at	CB923323	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1613261_at	CF518683	-	-	7e-12	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.95	1608878_s_at	CB923323	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.94	1615676_a_at	CB346815	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.95	1616923_s_at	CB919379	-	-	3e-1	At3g55790	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1608991_at	CA816013	hypothetical protein LOC100255967	-	8e-11	At1g67300	hexose transporter, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1607131_at	CB346815	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1613034_at	BQ797491	hypothetical protein LOC100248519	-	1e-1	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1610742_at	CB008464	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.93	1613422_at	CB345462	-	-	5e-1	At5g65165	SDH2-3	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.94	1620493_at	CF518674	hypothetical protein LOC100266795	-	2e-6	At5g41960	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1609810_at	CF608775	hypothetical protein LOC100245397	-	3e-32	At4g08900	arginase	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1619593_at	CF215832	hypothetical protein LOC100255022	-	2e-11	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.0	88.2	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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