Co-expression analysis

Gene ID	1614975_at
Gene name	hypothetical protein LOC100264828
Homology with Arabidopsis	Similar to At5g14440: - (HF=2e-1)
Module size	7 genes
NF	0.38
%ile	56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.84	1614975_at	CD799759	hypothetical protein LOC100264828	-	2e-1	At5g14440	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.89	1608866_at	CF414105	-	-	2e-1	At4g20350	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.84	1617589_at	CF213123	hypothetical protein LOC100251624	-	4e+0	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.85	1606514_at	CD799006	hypothetical protein LOC100256196	-	3e-4	At4g10265	wound-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.89	1619208_at	CA814525	hypothetical protein LOC100248930	-	6e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1609218_at	BM437324	-	-	3e-1	At4g40030	histone H3.2	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.84	1607146_at	CK138255.1	hypothetical LOC100266416	-	8e-2	At1g13550	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.5884.1.A1_at, orthologous to the query gene, 1614975_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.5884.1.A1_at	At5g14440	hypothetical protein LOC100192097	-	8e-2	At2g35880	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.18974.1.A1_at	At5g14440	hypothetical protein LOC100272472	-	3e-1	At1g17147	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.14759.1.S1_at	At5g14440	hypothetical protein LOC100191677	-	4e-2	At5g46640	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.13345.2.A1_x_at	At5g14440	hypothetical protein LOC100279020	-	2e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.7054.1.S1_at	At5g14440	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.12184.1.A1_at	At5g14440	-	-	6e-10	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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