CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614975_at

Gene name hypothetical protein LOC100264828
Homology with Arabidopsis Similar to At5g14440: - (HF=2e-1)

Module size 7 genes

NF 0.38

%ile 56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.84 1614975_at CD799759 hypothetical protein LOC100264828 - 2e-1 At5g14440 - O.I. H.G. S.X.
0.44 64.1 0.89 1608866_at CF414105 - - 2e-1 At4g20350 unknown protein O.I. H.G. S.X.
0.36 50.7 0.84 1617589_at CF213123 hypothetical protein LOC100251624 - 4e+0 At5g17710 EMB1241 (embryo defective 1241) O.I. H.G. S.X.
0.36 50.7 0.85 1606514_at CD799006 hypothetical protein LOC100256196 - 3e-4 At4g10265 wound-responsive protein, putative O.I. H.G. S.X.
0.36 50.7 0.89 1619208_at CA814525 hypothetical protein LOC100248930 - 6e+0 At5g48950 thioesterase family protein O.I. H.G. S.X.
0.36 50.7 0.92 1609218_at BM437324 - - 3e-1 At4g40030 histone H3.2 O.I. H.G. S.X.
0.15 15.6 0.84 1607146_at CK138255.1 hypothetical LOC100266416 - 8e-2 At1g13550 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 97.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the rice gene, Os09g0260101, orthologous to the query gene, 1614975_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os09g0260101 At5g14440 - - 2e+0 At1g02620 GTP-binding protein (SAR1A) O.I. H.G. S.X.
0.74 91.4 Os03g0587700 At5g14440 - - 7e-1 At3g28590 unknown protein O.I. H.G. S.X.
0.59 78.0 Os11g0622600 At5g14440 - MATH domain containing protein 2e+0 At4g17440 unknown protein O.I. H.G. S.X.
0.56 76.3 Os01g0343400 At5g14440 - - 1e+0 At3g29575 AFP3 (ABI FIVE BINDING PROTEIN 3) O.I. H.G. S.X.
0.44 58.1 Os10g0444600 At5g14440 - Phosphate transporter (Fragment) 3e-11 At4g08878 inorganic phosphate transporter, putative O.I. H.G. S.X.
0.43 55.4 Os01g0652700 At5g14440 - Protein of unknown function DUF538 family protein 5e-2 At1g49015 eukaryotic translation initiation factor-related O.I. H.G. S.X.
0.39 48.3 Os01g0369800 At5g14440 - - 7e+0 At2g46540 unknown protein O.I. H.G. S.X.
0.35 41.7 Os01g0138700 At5g14440 - - 2e+0 At1g56630 triacylglycerol lipase O.I. H.G. S.X.
0.33 38.8 Os03g0374700 At5g14440 - - 3e-2 At5g55680 glycine-rich protein O.I. H.G. S.X.
0.29 31.1 Os01g0820000 At5g14440 - Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)(Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H)(Cytochrome P450 73) 1e-17 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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