CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614975_at

Gene name hypothetical protein LOC100264828
Homology with Arabidopsis Similar to At5g14440: - (HF=2e-1)

Module size 7 genes

NF 0.38

%ile 56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.84 1614975_at CD799759 hypothetical protein LOC100264828 - 2e-1 At5g14440 - O.I. H.G. S.X.
0.44 64.1 0.89 1608866_at CF414105 - - 2e-1 At4g20350 unknown protein O.I. H.G. S.X.
0.36 50.7 0.84 1617589_at CF213123 hypothetical protein LOC100251624 - 4e+0 At5g17710 EMB1241 (embryo defective 1241) O.I. H.G. S.X.
0.36 50.7 0.85 1606514_at CD799006 hypothetical protein LOC100256196 - 3e-4 At4g10265 wound-responsive protein, putative O.I. H.G. S.X.
0.36 50.7 0.89 1619208_at CA814525 hypothetical protein LOC100248930 - 6e+0 At5g48950 thioesterase family protein O.I. H.G. S.X.
0.36 50.7 0.92 1609218_at BM437324 - - 3e-1 At4g40030 histone H3.2 O.I. H.G. S.X.
0.15 15.6 0.84 1607146_at CK138255.1 hypothetical LOC100266416 - 8e-2 At1g13550 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 97.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, HM02C20u_at, orthologous to the query gene, 1614975_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.1 HM02C20u_at At5g14440 - - 1e+0 At5g48920 TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) O.I. H.G. S.X.
0.50 66.9 HVSMEf0014C12r2_s_at At5g14440 - - 1e+1 At5g03840 TFL1 (TERMINAL FLOWER 1) O.I. H.G. S.X.
0.40 53.1 Contig4579_s_at At5g14440 - - 2e-9 At5g21150 PAZ domain-containing protein / piwi domain-containing protein O.I. H.G. S.X.
0.36 47.1 HVSMEf0011J16r2_at At5g14440 - - 1e+0 At1g58100 TCP family transcription factor, putative O.I. H.G. S.X.
0.15 14.1 HVSMEm0001B03r2_at At5g14440 - - 7e-2 At3g42150 unknown protein O.I. H.G. S.X.
0.13 11.6 HW06C04u_x_at At5g14440 - - 7e+0 At3g05980 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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