Co-expression analysis

Gene ID	1614975_at
Gene name	hypothetical protein LOC100264828
Homology with Arabidopsis	Similar to At5g14440: - (HF=2e-1)
Module size	7 genes
NF	0.38
%ile	56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.84	1614975_at	CD799759	hypothetical protein LOC100264828	-	2e-1	At5g14440	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.89	1608866_at	CF414105	-	-	2e-1	At4g20350	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.84	1617589_at	CF213123	hypothetical protein LOC100251624	-	4e+0	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.85	1606514_at	CD799006	hypothetical protein LOC100256196	-	3e-4	At4g10265	wound-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.89	1619208_at	CA814525	hypothetical protein LOC100248930	-	6e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1609218_at	BM437324	-	-	3e-1	At4g40030	histone H3.2	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.84	1607146_at	CK138255.1	hypothetical LOC100266416	-	8e-2	At1g13550	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.79942.1.S1_at, orthologous to the query gene, 1614975_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	GmaAffx.79942.1.S1_at	At5g14440	-	-	4e-6	At4g10265	wound-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.48940.1.S1_at	At5g14440	-	-	2e-1	At5g03630	ATMDAR2	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.4328.1.S1_at	At5g14440	-	-	9e-31	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.7713.1.S1_at	At5g14440	-	-	2e+0	At5g39890	unknown protein	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.3253.1.S1_at	At5g14440	-	-	6e-14	At4g17260	L-lactate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.92335.1.A1_s_at	At5g14440	-	-	3e-1	At5g20700	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.75412.1.S1_at	At5g14440	C2-H2 zinc finger protein	-	3e-1	At5g55720	pectate lyase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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