Co-expression analysis

Gene ID 1614966_at
Gene name similar to pumilio domain-containing protein PPD1
Homology with ArabidopsisSimilar to At2g29190: APUM2 (Arabidopsis Pumilio 2) (HF=1e-9)
Module size 7 genes
NF 0.64
%ile 90.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6183.20.991614966_atBQ796346similar to pumilio domain-containing protein PPD1-1e-9At2g29190APUM2 (Arabidopsis Pumilio 2)O.I.H.G.S.X.
0.7591.30.991608653_atCB975644hypothetical protein LOC100263217-5e+0At4g15020DNA binding / protein dimerizationO.I.H.G.S.X.
0.6787.90.991622765_atCF405914--4e+0At3g59450calcium-binding EF hand family proteinO.I.H.G.S.X.
0.6183.20.991617655_atCB348593hypothetical protein LOC100262391-5e-10At3g16620ATTOC120O.I.H.G.S.X.
0.5375.20.991616867_atCF405655hypothetical protein LOC100254223-2e-17At3g01090AKIN10 (Arabidopsis SNF1 kinase homolog 10)O.I.H.G.S.X.
0.5375.20.991617406_s_atCF415339hypothetical protein LOC100266010-2e-8At3g07220transcriptional activator, putativeO.I.H.G.S.X.
0.4666.50.991619282_atCB971606hypothetical protein LOC100252267-5e-75At4g21710NRPB2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.495.5GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.993.8GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147685Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation14Link to GEO
2.289.9GSM436391V. riparia (VR, PI588259) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM147703Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation32Link to GEO
1.987.2GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
1.987.2GSM147699Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation28Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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