Co-expression analysis

Gene ID	1614966_at
Gene name	similar to pumilio domain-containing protein PPD1
Homology with Arabidopsis	Similar to At2g29190: APUM2 (Arabidopsis Pumilio 2) (HF=1e-9)
Module size	7 genes
NF	0.64
%ile	90.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.99	1614966_at	BQ796346	similar to pumilio domain-containing protein PPD1	-	1e-9	At2g29190	APUM2 (Arabidopsis Pumilio 2)	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.99	1608653_at	CB975644	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1622765_at	CF405914	-	-	4e+0	At3g59450	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.99	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1616867_at	CF405655	hypothetical protein LOC100254223	-	2e-17	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1619282_at	CB971606	hypothetical protein LOC100252267	-	5e-75	At4g21710	NRPB2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.9	93.8	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
2.2	89.9	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147703	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	32
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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