Co-expression analysis

Gene ID	1614965_at
Gene name	MADS-box protein 4
Homology with Arabidopsis	Similar to At1g24260: SEP3 (SEPALLATA3) (HF=6e-36)
Module size	6 genes
NF	0.82
%ile	98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1614965_at	BQ792730	MADS-box protein 4	-	6e-36	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1621644_at	CB004591	-	-	3e-9	At3g23690	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1614418_at	CF414182	flowering-related B-class MADS-box protein	-	9e-15	At3g54340	AP3 (APETALA 3)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1612107_at	CF405996	hypothetical protein LOC100248597	-	6e+0	At5g18040	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1611561_a_at	CD800254	hypothetical protein LOC100240998	-	2e-2	At4g36850	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1613204_at	AF501625.1	glutathione-S-transferase /// hypothetical protein LOC100249549 /// hypothetical LOC100267917	-	4e-8	At1g17180	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.4	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147682	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	11
2.0	88.2	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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