Co-expression analysis

Gene ID	1614959_at
Gene name	hypothetical protein LOC100257499
Homology with Arabidopsis	Similar to At5g47060: senescence-associated protein-related (HF=1e-10)
Module size	11 genes
NF	0.43
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.96	1614959_at	BQ799150	hypothetical protein LOC100257499	-	1e-10	At5g47060	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1609717_at	BQ800414	hypothetical protein LOC100257178	-	1e-23	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1613355_at	CB922574	hypothetical protein LOC100260952	-	6e-12	At5g07360	amidase family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1613476_at	CD799773	hypothetical protein LOC100248089	-	2e-9	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1607861_s_at	CF513686	hypothetical protein LOC100253534	-	4e+0	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1616920_at	CF512566	hypothetical protein LOC100251933	-	2e-12	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1617185_at	CB005635	hypothetical protein LOC100263152	-	2e-2	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1621659_at	BQ798789	hypothetical protein LOC100253534	-	5e-52	At1g55500	ECT4	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1617420_x_at	CF202439.1	-	-	2e-20	At4g18100	60S ribosomal protein L32 (RPL32A)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1620045_at	CF413997	similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase	-	4e-38	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1612820_s_at	CF214272	hypothetical protein LOC100241755	-	2e-30	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.0	88.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.9	87.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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