Co-expression analysis

Gene ID	1614949_x_at
Gene name
Homology with Arabidopsis	Similar to At1g01100: 60S acidic ribosomal protein P1 (RPP1A) (HF=3e-3)
Module size	12 genes
NF	0.27
%ile	38.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	93.7	0.97	1614949_x_at	CF202459.1	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1622564_at	BM437316	hypothetical protein LOC100260573	-	1e-35	At1g58684	40S ribosomal protein S2, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1622177_s_at	CF972322.1	hypothetical protein LOC100260347	-	2e+0	At2g40745	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1622599_s_at	CF212773	hypothetical protein LOC100259736	-	1e-44	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1616919_s_at	CF516508	hypothetical protein LOC100253219	-	6e-15	At1g15250	60S ribosomal protein L37 (RPL37A)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1607140_at	CF514982	similar to 40S ribosomal S4 protein	-	5e-94	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1617969_at	CB344991	hypothetical protein LOC100260774	-	3e-10	At4g28450	nucleotide binding / protein binding	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1619625_s_at	CF214740	hypothetical protein LOC100242662	-	9e-24	At3g55750	60S ribosomal protein L35a (RPL35aD)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.98	1612563_s_at	CF202478.1	hypothetical protein LOC100242819	-	3e-3	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.98	1619077_at	CF513582	hypothetical protein LOC100256889	-	1e-60	At1g56330	ATSAR1B (SECRETION-ASSOCIATED RAS 1 B)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1609733_at	CB971633	hypothetical protein LOC100250067	-	5e-94	At2g40010	60S acidic ribosomal protein P0 (RPP0A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
2.2	89.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.1	89.1	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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