Co-expression analysis

Gene ID 1614917_at
Gene name hypothetical protein LOC100267340
Homology with ArabidopsisSimilar to At5g60660: PIP2 (HF=4e+0)
Module size 6 genes
NF 0.50
%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981614917_atCF372079hypothetical protein LOC100267340-4e+0At5g60660PIP2O.I.H.G.S.X.
0.4666.50.981608070_atCF214791hypothetical protein LOC100245501-1e+0At4g10880unknown proteinO.I.H.G.S.X.
0.4666.50.981615115_atCD801173hypothetical protein LOC100244778-1e-38At5g05080UBC22 (ubiquitin-conjugating enzyme 22)O.I.H.G.S.X.
0.4464.10.981613351_atCB972999hypothetical protein LOC100252023-2e-1At5g12970C2 domain-containing proteinO.I.H.G.S.X.
0.4464.10.981609302_atCB979609similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.2632.00.981607831_atBQ799075hypothetical protein LOC100249242-8e-7At3g03950protein bindingO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.90.971619954_atCB974333hypothetical protein LOC100257028-7e-16At5g07830AtGUS2 (Arabidopsis thaliana glucuronidase 2)O.I.H.G.S.X.
0.6081.90.961621880_s_atCK138206.1hypothetical protein LOC100262668-3e+0At5g14360ubiquitin family proteinO.I.H.G.S.X.
0.6081.90.971619627_atCB976213hypothetical protein LOC100257983-4e-6At5g04560DME (DEMETER)O.I.H.G.S.X.
0.5980.60.971614963_atCF210984hypothetical protein LOC100266167-8e-12At1g01950armadillo/beta-catenin repeat family protein / kinesin motor family proteinO.I.H.G.S.X.
0.5577.30.951616068_atCF403455--5e-7At1g78060glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.5577.30.961611932_atCB981245--5e-1At5g23830MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.5375.20.971616512_atCF405777hypothetical LOC100244665-2e-8At5g12350Ran GTPase binding / chromatin binding / zinc ion bindingO.I.H.G.S.X.
0.5072.70.961618251_atCF205842.1--6e-9At3g5343060S ribosomal protein L12 (RPL12B)O.I.H.G.S.X.
0.5072.70.971616521_atAF196485.1beta-tubulin-9e-56At5g62700TUB3O.I.H.G.S.X.
0.5072.70.971618343_atCB341499hypothetical protein LOC100242968-2e-9At1g15490hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.4767.70.961617573_atCF405014hypothetical protein LOC100266600-2e-6At4g28100unknown proteinO.I.H.G.S.X.
0.4767.70.981609143_atCF209852hypothetical protein LOC100254311-2e+1At5g66240transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4464.10.981612516_atCB976044hypothetical protein LOC100252647-8e-9At4g39400BRI1 (BRASSINOSTEROID INSENSITIVE 1)O.I.H.G.S.X.
0.4057.70.961607374_atCF404162hypothetical protein LOC100246224-1e-13At5g20950glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.4057.70.971609442_atCF373210hypothetical protein LOC100243127-3e-4At3g05800transcription factorO.I.H.G.S.X.
0.4057.70.971616016_atCF403186hypothetical protein LOC100265943-4e-1At2g27750nucleolar matrix protein-relatedO.I.H.G.S.X.
0.4057.70.971608829_atCD802477hypothetical protein LOC100258592-9e-24At4g03415catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.3853.60.981612852_atCB976927hypothetical protein LOC100243284-5e-76At5g62890permease, putativeO.I.H.G.S.X.
0.3751.70.951613945_atCF414185hypothetical protein LOC100262668-5e-1At5g40770ATPHB3 (PROHIBITIN 3)O.I.H.G.S.X.
0.3650.70.971608586_atCF514688hypothetical protein LOC100241814-4e-18At4g21960PRXR1O.I.H.G.S.X.
0.3650.70.971611516_atCB008162hypothetical protein LOC100262734-2e-5At3g28690protein kinase, putativeO.I.H.G.S.X.
0.3548.50.961610468_atCF207447hypothetical protein LOC100241666-1e+0At5g67110ALC (ALCATRAZ)O.I.H.G.S.X.
0.3345.70.951608161_atCF203744.1--1e+1At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.3345.70.971622185_atCF209948--3e-2At1g78915bindingO.I.H.G.S.X.
0.3345.70.981608069_atCF405763hypothetical protein LOC100250173-2e-1At5g36925unknown proteinO.I.H.G.S.X.
0.3345.70.981622488_atCF373160hypothetical protein LOC100262283-4e-25At1g50570C2 domain-containing proteinO.I.H.G.S.X.
0.3345.70.981606807_atBQ794559hypothetical protein LOC100264697-7e-21At5g11710epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedO.I.H.G.S.X.
0.3243.10.921612524_atCF372313hypothetical protein LOC100243536-8e-26At3g06350MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)O.I.H.G.S.X.
0.3243.10.961621407_atCD801019hypothetical protein LOC100255878-2e-75At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.
0.3243.10.961610567_atCF212759--3e-5At3g48185unknown proteinO.I.H.G.S.X.
0.3141.30.951617084_atCF203736.1--4e-9At4g11820MVA1O.I.H.G.S.X.
0.3141.30.961620298_atCF513792hypothetical protein LOC100253937-1e-18At1g47270AtTLP6 (TUBBY LIKE PROTEIN 6)O.I.H.G.S.X.
0.3141.30.961614200_atCD009831hypothetical protein LOC100258356-1e-3At1g48220ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3141.30.971606662_atCB979542similar to somatic embryogenesis receptor kinase-6e-59At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.3141.30.981617837_atCB972171hypothetical protein LOC100260846-1e-12At5g13260unknown proteinO.I.H.G.S.X.
0.3141.30.981622084_atCF513595hypothetical protein LOC100256435-1e+0At5g51451unknown proteinO.I.H.G.S.X.
0.3141.30.981613050_atCB971087hypothetical protein LOC100248215-5e-4At1g20470auxin-responsive family proteinO.I.H.G.S.X.
0.3039.40.951611579_atCF403165hypothetical protein LOC100261454-2e-2At5g19090heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3039.40.941618573_atCF216076--3e-2At1g29220transcriptional regulator family proteinO.I.H.G.S.X.
0.2937.70.961620995_atCF512105similar to kinesin motor protein-related-1e+0At1g23205invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2937.70.961614407_atCF403465--6e-2At1g22750unknown proteinO.I.H.G.S.X.
0.2937.70.961613115_atCB973470hypothetical protein LOC100266895-2e-1At3g48540cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.2937.70.961615121_atCK138189.1hypothetical protein LOC100253823-1e-9At3g57780-O.I.H.G.S.X.
0.2937.70.971609174_atCF403273hypothetical protein LOC100252716-5e-48At3g25500AFH1 (FORMIN HOMOLOGY 1)O.I.H.G.S.X.
0.2937.70.971617440_atCF373136hypothetical protein LOC100247017-8e-2At5g61470zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2937.70.971620576_atCD800420hypothetical protein LOC100246757-7e-5At1g27370squamosa promoter-binding protein-like 10 (SPL10)O.I.H.G.S.X.
0.2937.70.971608474_atCF403530hypothetical protein LOC100261256-1e-3At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.
0.2937.70.981609772_atCF511919hypothetical protein LOC100246247-3e-1At3g56880VQ motif-containing proteinO.I.H.G.S.X.
0.2837.70.961619599_atBQ794450hypothetical protein LOC100243558-4e+0At5g01610unknown proteinO.I.H.G.S.X.
0.2837.70.961607486_atCD800173hypothetical protein LOC100242197-6e-2At2g01990unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.698.4GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.696.0GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436370Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM287881Green soft berry B10 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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