CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614917_at

Gene name hypothetical protein LOC100267340
Homology with Arabidopsis Similar to At5g60660: PIP2 (HF=4e+0)

Module size 6 genes

NF 0.50

%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1614917_at CF372079 hypothetical protein LOC100267340 - 4e+0 At5g60660 PIP2 O.I. H.G. S.X.
0.46 66.5 0.98 1608070_at CF214791 hypothetical protein LOC100245501 - 1e+0 At4g10880 unknown protein O.I. H.G. S.X.
0.46 66.5 0.98 1615115_at CD801173 hypothetical protein LOC100244778 - 1e-38 At5g05080 UBC22 (ubiquitin-conjugating enzyme 22) O.I. H.G. S.X.
0.44 64.1 0.98 1613351_at CB972999 hypothetical protein LOC100252023 - 2e-1 At5g12970 C2 domain-containing protein O.I. H.G. S.X.
0.44 64.1 0.98 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) O.I. H.G. S.X.
0.26 32.0 0.98 1607831_at BQ799075 hypothetical protein LOC100249242 - 8e-7 At3g03950 protein binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.6 98.4 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the rice gene, Os05g0535900, orthologous to the query gene, 1614917_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os05g0535900 At5g60660 - IQ calmodulin-binding region domain containingprotein 1e+0 At5g27690 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.71 89.6 Os03g0328000 At5g60660 - Adapter protein SPIKE1 2e-44 At4g16340 SPK1 (SPIKE1) O.I. H.G. S.X.
0.61 81.2 Os07g0568000 At5g60660 - Conserved hypothetical protein 2e-2 At1g10180 unknown protein O.I. H.G. S.X.
0.50 68.0 Os06g0308300 At5g60660 - 65kD microtubule associated protein 3e-29 At5g55230 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1) O.I. H.G. S.X.
0.50 68.0 Os01g0832300 At5g60660 - Calcium-dependent protein kinase 5e-21 At3g51850 CPK13 O.I. H.G. S.X.
0.33 38.8 Os12g0640900 At5g60660 - Myosin II heavy chain-like family protein 4e-50 At1g24764 ATMAP70-2 (microtubule-associated proteins 70-2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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