Co-expression analysis

Gene ID	1614917_at
Gene name	hypothetical protein LOC100267340
Homology with Arabidopsis	Similar to At5g60660: PIP2 (HF=4e+0)
Module size	6 genes
NF	0.50
%ile	75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1608070_at	CF214791	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1615115_at	CD801173	hypothetical protein LOC100244778	-	1e-38	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1613351_at	CB972999	hypothetical protein LOC100252023	-	2e-1	At5g12970	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1607831_at	BQ799075	hypothetical protein LOC100249242	-	8e-7	At3g03950	protein binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	98.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, HVSMEf0018I06r2_s_at, orthologous to the query gene, 1614917_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	HVSMEf0018I06r2_s_at	At5g60660	-	-	2e+0	At3g27980	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig18179_at	At5g60660	-	-	3e-1	At1g11750	CLPP6	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig17267_at	At5g60660	-	-	2e-6	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.04	3.4	Contig4704_at	At5g60660	-	-	6e-53	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig4928_at	At5g60660	-	-	8e-32	At5g07440	GDH2 (GLUTAMATE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.02	1.8	HM12O22r_s_at	At5g60660	-	-	7e+0	At5g26912	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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