Co-expression analysis

Gene ID	1614822_at
Gene name
Homology with Arabidopsis	Similar to At4g08980: F-box family protein (FBW2) (HF=4e+0)
Module size	21 genes
NF	0.21
%ile	30.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.88	1614822_at	CB342269	-	-	4e+0	At4g08980	F-box family protein (FBW2)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.94	1619124_at	CB979012	-	-	1e+0	At1g08220	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.95	1612910_at	CD004223	-	-	1e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1618358_at	CD715932	-	-	3e-1	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.91	1617287_at	AY427196.1	-	-	2e-17	At5g10530	lectin protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.93	1614199_at	CB345118	-	-	2e+1	At5g44572	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1617458_at	CF202711.1	-	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.94	1612527_at	CF568913	-	-	1e+0	At1g69600	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.95	1611427_x_at	CF202711.1	-	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1616161_at	CB982478	-	-	4e+0	At5g15840	CO (CONSTANS)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1609056_at	CF511437	-	-	4e+0	At3g48208	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.94	1622815_at	CF212001	-	-	1e+0	At1g68935	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1612930_at	CB975986	hypothetical protein LOC100255839	-	6e-7	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.95	1607490_at	CF214086	hypothetical protein LOC100258031	-	1e-5	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1621053_at	CF414284	hypothetical protein LOC100258640	-	1e-9	At1g66430	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.92	1616228_at	CD717999	-	-	2e+0	At1g19086	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.95	1612421_at	CF213299	hypothetical protein LOC100262002	-	4e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1610577_at	CD802424	hypothetical protein LOC100253210	-	5e-38	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.95	1618124_at	CB343324	-	-	2e-14	At3g19490	ATNHD1	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.95	1610065_at	CF373155	hypothetical protein LOC100260744	-	3e-1	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1612555_s_at	CB979725	hypothetical protein LOC100246037	-	8e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.6	83.3	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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