CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614762_at

Gene name
Homology with Arabidopsis Similar to At5g65207: unknown protein (HF=1e-2)

Module size 15 genes

NF 0.78

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 79.8 0.87 1614762_at CF414632 - - 1e-2 At5g65207 unknown protein O.I. H.G. S.X.
0.90 95.6 0.92 1612288_at CB969093 - - 3e-1 At4g09040 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.87 95.2 0.93 1616735_at CF604749 hypothetical protein LOC100257315 - 1e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) O.I. H.G. S.X.
0.87 95.2 0.94 1617334_s_at CF607954 - - 1e-9 At5g65660 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.85 94.9 0.94 1606845_at CF212991 hypothetical protein LOC100257315 - 1e+0 At3g52510 - O.I. H.G. S.X.
0.83 94.6 0.93 1618561_at CF204500.1 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.81 93.7 0.93 1622012_at CF204966.1 - - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.80 93.6 0.92 1620225_s_at CD798094 - - 1e+0 At5g38720 unknown protein O.I. H.G. S.X.
0.80 93.6 0.93 1606462_at CA817195 hypothetical protein LOC100248701 - 1e+0 At1g04970 lipid-binding serum glycoprotein family protein O.I. H.G. S.X.
0.78 92.6 0.92 1618703_at CB346386 hypothetical protein LOC100249546 - 6e-2 At2g47350 PAPA-1-like family protein / zinc finger (HIT type) family protein O.I. H.G. S.X.
0.77 92.3 0.94 1621244_s_at CD797552 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.76 91.5 0.94 1609555_at CD719835 hypothetical protein LOC100261123 - 2e-30 At5g08790 ATAF2 O.I. H.G. S.X.
0.75 91.3 0.92 1606429_at CF373019 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) O.I. H.G. S.X.
0.58 79.8 0.92 1620319_s_at CF205531.1 R2R3 Myb14 transcription factor - 9e-2 At4g11660 AT-HSFB2B O.I. H.G. S.X.
0.56 79.4 0.92 1619850_at CD717468 hypothetical protein LOC100256776 - 3e-48 At2g05710 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.6 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.2 89.9 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.0 88.2 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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