Co-expression analysis

Gene ID	1614751_at
Gene name	hypothetical protein LOC100241010
Homology with Arabidopsis	Similar to At4g22380: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (HF=5e-37)
Module size	6 genes
NF	0.52
%ile	77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.99	1614751_at	CA809521	hypothetical protein LOC100241010	-	5e-37	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1615911_at	CF512086	hypothetical protein LOC100243469	-	2e-66	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.99	1614840_at	CF415070	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1614425_at	CB339536	hypothetical protein LOC100251424	-	8e-7	At3g02200	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.99	1621991_at	CB978460	hypothetical protein LOC100243393	-	1e-1	At2g41060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.99	1612039_at	BQ799884	hypothetical protein LOC100266651	-	1e-18	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.6	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.3	90.7	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.2	89.9	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage