CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614746_at

Gene name hypothetical protein LOC100259225
Homology with Arabidopsis Similar to At2g17860: pathogenesis-related thaumatin family protein (HF=6e-3)

Module size 6 genes

NF 0.91

%ile 99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1614746_at CF214284 hypothetical protein LOC100259225 - 6e-3 At2g17860 pathogenesis-related thaumatin family protein O.I. H.G. S.X.
0.91 98.8 0.97 1611976_at CF213700 hypothetical protein LOC100260879 - 4e-1 At2g20362 unknown protein O.I. H.G. S.X.
0.91 98.8 0.98 1611598_at CB970208 hypothetical protein LOC100244034 - 7e+0 At5g38630 ACYB-1 O.I. H.G. S.X.
0.83 94.6 0.97 1616000_at CF215116 hypothetical protein LOC100257299 - 2e-1 At4g35025 unknown protein O.I. H.G. S.X.
0.77 92.3 0.97 1622393_at CF373123 proline rich protein 1 - 1e+0 At5g67460 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.71 89.5 0.97 1614877_at CB002982 hypothetical protein LOC100254752 - 4e-4 At1g63310 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.95	1607025_at	CB340055	hypothetical protein LOC100264105	-	4e-1	At1g17100	SOUL heme-binding family protein	O.I.	H.G.	S.X.
0.86	95.1	0.96	1618487_at	CF403542	-	-	1e+0	At3g01980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.53	75.2	0.97	1613941_at	CA818531	hypothetical protein LOC100251097	-	2e+0	At1g65390	ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)	O.I.	H.G.	S.X.
0.50	72.7	0.97	1607467_at	CD800366	hypothetical protein LOC100257154	-	4e+0	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	O.I.	H.G.	S.X.
0.46	66.5	0.95	1610792_at	CD714708	-	-	1e-6	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	O.I.	H.G.	S.X.
0.35	48.5	0.95	1608001_at	CB982653	hypothetical protein LOC100247409	-	7e-2	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.
0.31	41.3	0.96	1616685_at	CF211776	hypothetical protein LOC100244128	-	2e+0	At4g24990	ATGP4	O.I.	H.G.	S.X.
0.29	37.7	0.93	1609241_at	CF414695	similar to T23E18.17	-	8e-1	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	O.I.	H.G.	S.X.
0.29	37.7	0.95	1620517_at	CF414774	similar to cysteine protease 14	-	8e-17	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.
0.26	32.0	0.94	1617748_a_at	CD801712	hypothetical protein LOC100262607	-	6e-3	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.0 88.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
1.9 87.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
1.7 84.7 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
1.6 83.3 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.6 83.3 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
1.6 83.3 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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