CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614746_at

Gene name hypothetical protein LOC100259225
Homology with Arabidopsis Similar to At2g17860: pathogenesis-related thaumatin family protein (HF=6e-3)

Module size 6 genes

NF 0.91

%ile 99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1614746_at CF214284 hypothetical protein LOC100259225 - 6e-3 At2g17860 pathogenesis-related thaumatin family protein O.I. H.G. S.X.
0.91 98.8 0.97 1611976_at CF213700 hypothetical protein LOC100260879 - 4e-1 At2g20362 unknown protein O.I. H.G. S.X.
0.91 98.8 0.98 1611598_at CB970208 hypothetical protein LOC100244034 - 7e+0 At5g38630 ACYB-1 O.I. H.G. S.X.
0.83 94.6 0.97 1616000_at CF215116 hypothetical protein LOC100257299 - 2e-1 At4g35025 unknown protein O.I. H.G. S.X.
0.77 92.3 0.97 1622393_at CF373123 proline rich protein 1 - 1e+0 At5g67460 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.71 89.5 0.97 1614877_at CB002982 hypothetical protein LOC100254752 - 4e-4 At1g63310 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.0 88.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
1.9 87.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
1.7 84.7 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
1.6 83.3 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.6 83.3 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
1.6 83.3 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the rice gene, Os02g0792000, orthologous to the query gene, 1614746_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 Os02g0792000 At2g17860 - Conserved hypothetical protein 6e-2 At3g42310 unknown protein O.I. H.G. S.X.
0.40 51.1 Os04g0324500 At2g17860 - - 3e-2 At1g22400 UGT85A1 O.I. H.G. S.X.
0.36 44.0 Os12g0586800 At2g17860 - - 6e-2 At1g49520 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.33 38.8 Os01g0221900 At2g17860 - Conserved hypothetical protein 2e+0 At3g42990 unknown protein O.I. H.G. S.X.
0.31 34.5 Os11g0528800 At2g17860 - - 3e+0 At4g14358 - O.I. H.G. S.X.
0.27 27.5 Os04g0155400 At2g17860 - - 6e+0 At5g57150 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.18 13.7 Os04g0394966 At2g17860 - - 2e+0 At5g47080 CKB1 O.I. H.G. S.X.
0.16 11.3 Os04g0228600 At2g17860 - - 7e-1 At5g25750 unknown protein O.I. H.G. S.X.
0.13 8.2 Os03g0246900 At2g17860 - LOB domain protein 18 5e-22 At4g00220 JLO (JAGGED LATERAL ORGANS) O.I. H.G. S.X.
0.10 5.7 Os11g0230800 At2g17860 - - 5e-1 At5g01570 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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