Co-expression analysis

Gene ID	1614746_at
Gene name	hypothetical protein LOC100259225
Homology with Arabidopsis	Similar to At2g17860: pathogenesis-related thaumatin family protein (HF=6e-3)
Module size	6 genes
NF	0.91
%ile	99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1614746_at	CF214284	hypothetical protein LOC100259225	-	6e-3	At2g17860	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.97	1611976_at	CF213700	hypothetical protein LOC100260879	-	4e-1	At2g20362	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.98	1611598_at	CB970208	hypothetical protein LOC100244034	-	7e+0	At5g38630	ACYB-1	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1616000_at	CF215116	hypothetical protein LOC100257299	-	2e-1	At4g35025	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.97	1622393_at	CF373123	proline rich protein 1	-	1e+0	At5g67460	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.97	1614877_at	CB002982	hypothetical protein LOC100254752	-	4e-4	At1g63310	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.9	87.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.7	84.7	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.6	83.3	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.6	83.3	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the barley gene, HC113E08_SK_at, orthologous to the query gene, 1614746_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HC113E08_SK_at	At2g17860	-	-	7e-2	At5g50490	NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig19732_at	At2g17860	-	-	1e+0	At5g30490	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig25766_at	At2g17860	-	-	7e-18	At2g36230	APG10 (ALBINO AND PALE GREEN 10)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig25667_x_at	At2g17860	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	HD03N13u_at	At2g17860	-	-	2e+1	At5g42591	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	2623978_R_1403-2212_at	At2g17860	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage