CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614746_at

Gene name hypothetical protein LOC100259225
Homology with Arabidopsis Similar to At2g17860: pathogenesis-related thaumatin family protein (HF=6e-3)

Module size 6 genes

NF 0.91

%ile 99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1614746_at CF214284 hypothetical protein LOC100259225 - 6e-3 At2g17860 pathogenesis-related thaumatin family protein O.I. H.G. S.X.
0.91 98.8 0.97 1611976_at CF213700 hypothetical protein LOC100260879 - 4e-1 At2g20362 unknown protein O.I. H.G. S.X.
0.91 98.8 0.98 1611598_at CB970208 hypothetical protein LOC100244034 - 7e+0 At5g38630 ACYB-1 O.I. H.G. S.X.
0.83 94.6 0.97 1616000_at CF215116 hypothetical protein LOC100257299 - 2e-1 At4g35025 unknown protein O.I. H.G. S.X.
0.77 92.3 0.97 1622393_at CF373123 proline rich protein 1 - 1e+0 At5g67460 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.71 89.5 0.97 1614877_at CB002982 hypothetical protein LOC100254752 - 4e-4 At1g63310 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.0 88.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
1.9 87.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
1.7 84.7 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
1.6 83.3 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.6 83.3 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
1.6 83.3 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g17860, orthologous to the query gene, 1614746_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g17860 816296 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. H.G. S.X.
0.33 38.1 At2g38590 818441 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. H.G. S.X.
0.33 38.1 At3g30230 822723 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAV O.I. H.G. S.X.
0.33 38.1 At4g38070 829963 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAV O.I. H.G. S.X.
0.29 30.3 At4g35170 829670 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.08 2.3 At4g04130 825725 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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