Co-expression analysis

Gene ID 1614746_at
Gene name hypothetical protein LOC100259225
Homology with ArabidopsisSimilar to At2g17860: pathogenesis-related thaumatin family protein (HF=6e-3)
Module size 6 genes
NF 0.91
%ile 99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971614746_atCF214284hypothetical protein LOC100259225-6e-3At2g17860pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.9198.80.971611976_atCF213700hypothetical protein LOC100260879-4e-1At2g20362unknown proteinO.I.H.G.S.X.
0.9198.80.981611598_atCB970208hypothetical protein LOC100244034-7e+0At5g38630ACYB-1O.I.H.G.S.X.
0.8394.60.971616000_atCF215116hypothetical protein LOC100257299-2e-1At4g35025unknown proteinO.I.H.G.S.X.
0.7792.30.971622393_atCF373123proline rich protein 1-1e+0At5g67460glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.7189.50.971614877_atCB002982hypothetical protein LOC100254752-4e-4At1g63310-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.088.2GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
1.987.2GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.784.7GSM436410V. riparia (VR, PI588259) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM147725Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation54Link to GEO
1.683.3GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.683.3GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
1.683.3GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g17860, orthologous to the query gene, 1614746_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At2g17860816296pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.H.G.S.X.
0.3338.1At2g38590818441F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.3338.1At3g30230822723myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAVO.I.H.G.S.X.
0.3338.1At4g38070829963bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAVO.I.H.G.S.X.
0.2930.3At4g35170829670-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.082.3At4g04130825725transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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