Co-expression analysis

Gene ID	1614718_at
Gene name	hypothetical protein LOC100264520
Homology with Arabidopsis	Similar to At5g20700: senescence-associated protein-related (HF=7e-11)
Module size	6 genes
NF	0.02
%ile	4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.94	1614718_at	CB347599	hypothetical protein LOC100264520	-	7e-11	At5g20700	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.93	1610618_at	CB347516	hypothetical protein LOC100264520	-	3e-1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.95	1611686_at	CB969423	hypothetical protein LOC100255085	-	7e+0	At5g26080	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.96	1606658_at	CB981496	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803	-	5e-26	At2g22870	EMB2001 (embryo defective 2001)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.94	1607788_at	CA815954	hypothetical protein LOC100254226	-	7e-19	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.94	1615203_at	CA818658	hypothetical protein LOC100258284	-	7e-2	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.44.1.A1_at, orthologous to the query gene, 1614718_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	ZmAffx.44.1.A1_at	At5g20700	-	-	8e-1	At4g32060	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	ZmAffx.656.2.A1_at	At5g20700	-	-	1e+0	At3g27329	-	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.889.2.S1_at	At5g20700	-	-	4e-20	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.10002.1.A1_a_at	At5g20700	-	-	2e+0	At1g67060	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	RPTR-Zm-U89963-1_x_at	At5g20700	-	-				O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.1079.6.A1_at	At5g20700	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	O.I.	H.G.	S.X.	Please select
0.42	51.3	ZmAffx.397.1.A1_at	At5g20700	-	-	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.9142.1.A1_at	At5g20700	-	-	4e-1	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.9745.1.A1_at	At5g20700	-	-	2e+1	At5g24570	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	ZmAffx.715.1.S1_at	At5g20700	-	-	2e-1	At1g04670	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	ZmAffx.302.1.A1_at	At5g20700	-	-	8e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.652.1.S1_at	At5g20700	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.31	31.6	ZmAffx.675.1.A1_at	At5g20700	-	-	3e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.9756.1.A1_at	At5g20700	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select
0.30	29.8	ZmAffx.944.1.S1_at	At5g20700	-	-	2e-10	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.628.1.S1_at	At5g20700	-	-	1e+1	At5g13340	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.16502.9.A1_a_at	At5g20700	60S ribosomal protein L36-2	-	3e+0	At5g21125	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.19028.1.S1_at	At5g20700	hypothetical protein LOC100192863	-	4e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	ZmAffx.1055.1.S1_at	At5g20700	hypothetical protein LOC100279811	-	5e-2	At4g01940	NFU1	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.16180.1.A1_at	At5g20700	-	-	5e-2	At2g28440	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	ZmAffx.144.1.S1_at	At5g20700	-	-	8e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select
0.17	10.6	ZmAffx.890.1.S1_at	At5g20700	protein dimerization	-	3e+0	At5g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	ZmAffx.1056.1.A1_at	At5g20700	-	-	3e+0	At1g31370	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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